Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01028 ATGCTCAAAGCAGAGATGGACTCTTCTTTTTCGTCCACACCTCATCCAAACAGTTACCAGGTTCCTTCACAAACTATGGATACAAGCATGAACAGTGCCCAAGTATCAGAATATGAAGAAGCTGAATCTGCATTCAATAGCCATGCAAGTTCTGAGTTTTATTCTTTCCTGGAGTTACAACGCCCTGTGGAGAAGATTATAGATCAACCTGCTGGTTCTTATTCTCCTCACCCACACATAAATGAGCAAAAGAAGTTACCCGTCAATGCTGAGGTGAATTACATCTCACTCACTCAAGACAGAAAAATCATAGACATTCATAATGGTGGATTGATATATGAATCCCCAAAACCCCTGGGATTTTCCTCATGGGAAGATATCTTAGAAAATAATGGAGGAAATCAACACATGCCTTTTCAGCCTTTATTTCCTGAAATGCAACCTGATGACATGGCAGTCAGTAGCAATTTTTGTCAAGGATATGACATAATGGTGCCACATTTGACCACCAGCATGGCTAAGCTGCATGACAATGGAAGTCTTATACAAGCTGAAGGAAGTTGGCAGGGATATAGTGTTGATTCTTTACGCGTGTCCAGTTGGCCTATAGACAATGTCCATTCAAGCTCAGCATGTGAGGCTAGTTGTAGCAACTGTGAGCATGAAGTTAATGAAGTTGATATTCAGGAATCCTTGGAACAGTCTCTTCTCCATCAACACAAACAAAACAAGGTTCTAATGCTAAATGATCCTCAAGAGATGCTTCTGAATACAAAAGAAAAACTAAAATCAGATTTTGAGGCCAGTAGAACCCTGGATGGAATAGAAGACACACCTTTCACTTTTAAAAGGACTCCGTTAGATGGATCCCCAGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTTAACCAATGGATGAGTAAAGAGCTTGGAGATGTAGAAGAATCAAATAAACCATCTACTTCTGGTGCTTATTGGGATACAGTTGAAAGTGAAAGTGAGGTTGGCAGCACAACTATTCCTTCCCAAGGGCACCTGGACACCTATGTATTGGATCCATCTGTTTCCAATGAGCAGCTTTTTAGCATTATTGACTATTCCCCAAGCTGGGCATTTGAAGGGTCAGAAGTTAAGATTATCATTTCTGGACGATTCTTAAGAAGCCAACAAGAAGCAGAACAATGTAAATGGTCATGCATGTTTGGTGAGGTAGAAGTGCCTGCAGTGATACTTGCAAAAGATGTTCTTTGCTGTCATACTCCTCCACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGCAGTGAAGTGCGAGAATTTGATTTCCAGGTCAACTGTACTCAAGAAATCAACACTGCAGCTAAGGATAGAGCCAGCATTTTTCTTACTCTTAGTAGACGATTTGGAGAACTGTTATCCCTGGGGCATGCCCTTCCTCAGAATTCAGATTCAATCAGTGAAAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCTTTGCTAAGGGGGGAGGATGATGTTTGGGACAAACTACTGGAACTTACTCAAGAGAAAGATTTTTCTCCAGAAGATTTGCAGGAGCAGCTGCTTCAAAATCTTCTAAAAGATAAGTTGCACGCATGGCTCCTTCAGAAAATTACAGAAGATGGGAAAGGCCCCAATGTATTGGATGAGGGTGGACAAGGTGTGCTTCATTTTGCTGCTGCTCTTGGCTACGATTGGGCCCTAGAACCCACAGTAGTTGCTGGTGTCAATGTGAACTTTCGTGACGTAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTATGGCAGGGAGCGCACAGTTGCTTTCCTCATATCTCTTGGCGCAGCACCTGGGTTGCTGACTGATCCATGTCCAGAACATCCTTCTGGTAGAACACCAGCTGATCTAGCTTCTACAAATGGGCATAAAGGAATTGCAGGGTATCTCGCAGAATCTTCACTTAGTGCACAACTCACTACTCTTGATTTGAACAAGGATGTGGGAGAAAATTCTGGAACCAAAGTGGTCCAAAGAACCCAAAACATTGCTCAAGTTAATGATCTTGATGGTCCATCATATGAACAGTCGCTGAAAGATTCATTGGCTGCAGTGTGCAATGCCACCCAAGCTGCGGCTCGGATTCATCAAGTCTTCAGAATGCAATCATTCCAGAGAAAGCAACTGAAGGAATTTGGTGATGACAAATTTGGAATATCTGATGAACGTGCTCTTTCACTTGTAAAAATGAATGGGAAATCACACAAGTCAGGATCACGCGATGAGCCGGTCCATGCTGCTGCAATACGTATCCAGAACAAATTCCGCGGTTGGAAGGGCAGAAAAGAATTTTTGATGATTCGACAACGTATAGTAAAAATTCAGGCTCATGTGAGAGGACACCAGGTTAGGAAAAATTGTGGGAAGATAATTTGGTCTGTTGGGATATTGGAGAAGGTTATTTTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGAGGATTTAAATCAGAGGCCAATTCTGAGGTAACTATGATACAAGATGTAACTTCCCCTGAGGATGACTATGATGTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGATTGCAGAAAGCCCTAGCCAGGGTGAAGTCAATGATTCAGTATCCAGAAGCAAGGGACCAATACCATAGGGTGCTGAATGTAGTGACTGAGATCCAAGAAAATCAGGTAAAGCATGATAGCAATTGTAACAATTCAGAAGAAATGAGAGACTTCAATAACCTCACTGATCTTGAAGCACTGTTGGACGAAGATATTTTCATGCCTACAGCAACTTAG 2841 0.4217 MLKAEMDSSFSSTPHPNSYQVPSQTMDTSMNSAQVSEYEEAESAFNSHASSEFYSFLELQRPVEKIIDQPAGSYSPHPHINEQKKLPVNAEVNYISLTQDRKIIDIHNGGLIYESPKPLGFSSWEDILENNGGNQHMPFQPLFPEMQPDDMAVSSNFCQGYDIMVPHLTTSMAKLHDNGSLIQAEGSWQGYSVDSLRVSSWPIDNVHSSSACEASCSNCEHEVNEVDIQESLEQSLLHQHKQNKVLMLNDPQEMLLNTKEKLKSDFEASRTLDGIEDTPFTFKRTPLDGSPAEEGLKKLDSFNQWMSKELGDVEESNKPSTSGAYWDTVESESEVGSTTIPSQGHLDTYVLDPSVSNEQLFSIIDYSPSWAFEGSEVKIIISGRFLRSQQEAEQCKWSCMFGEVEVPAVILAKDVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVNCTQEINTAAKDRASIFLTLSRRFGELLSLGHALPQNSDSISENEKSQLRSKISSLLRGEDDVWDKLLELTQEKDFSPEDLQEQLLQNLLKDKLHAWLLQKITEDGKGPNVLDEGGQGVLHFAAALGYDWALEPTVVAGVNVNFRDVNGWTALHWAAFYGRERTVAFLISLGAAPGLLTDPCPEHPSGRTPADLASTNGHKGIAGYLAESSLSAQLTTLDLNKDVGENSGTKVVQRTQNIAQVNDLDGPSYEQSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQLKEFGDDKFGISDERALSLVKMNGKSHKSGSRDEPVHAAAIRIQNKFRGWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEANSEVTMIQDVTSPEDDYDVLKEGRKQTEQRLQKALARVKSMIQYPEARDQYHRVLNVVTEIQENQVKHDSNCNNSEEMRDFNNLTDLEALLDEDIFMPTAT 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01028 946 ProSiteProfiles Ankyrin repeat region circular profile. 598 623 - -
Viun3g01028 946 ProSiteProfiles IQ motif profile. 772 800 IPR000048 GO:0005515
Viun3g01028 946 FunFam Calmodulin-binding transcription activator 2 527 674 - -
Viun3g01028 946 Gene3D - 769 817 - -
Viun3g01028 946 ProSiteProfiles Ankyrin repeat profile. 598 630 IPR002110 GO:0005515
Viun3g01028 946 SUPERFAMILY Ankyrin repeat 543 659 IPR036770 -
Viun3g01028 946 Gene3D - 521 685 IPR036770 -
Viun3g01028 946 Pfam IQ calmodulin-binding motif 796 813 IPR000048 GO:0005515
Viun3g01028 946 Pfam IQ calmodulin-binding motif 772 791 IPR000048 GO:0005515
Viun3g01028 946 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 909 - -
Viun3g01028 946 FunFam Calmodulin-binding transcription activator 2 770 818 - -
Viun3g01028 946 FunFam Calmodulin-binding transcription activator 2 356 452 - -
Viun3g01028 946 Pfam IPT/TIG domain 363 437 IPR002909 -
Viun3g01028 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 820 IPR027417 -
Viun3g01028 946 Gene3D Immunoglobulins 355 452 IPR013783 -
Viun3g01028 946 SMART iq_5 793 815 IPR000048 GO:0005515
Viun3g01028 946 SMART iq_5 770 792 IPR000048 GO:0005515
Viun3g01028 946 MobiDBLite consensus disorder prediction 1 33 - -
Viun3g01028 946 Pfam Ankyrin repeats (3 copies) 570 665 IPR002110 GO:0005515
Viun3g01028 946 ProSiteProfiles IQ motif profile. 794 818 IPR000048 GO:0005515
Viun3g01028 946 SUPERFAMILY E set domains 363 448 IPR014756 -
Viun3g01028 946 SMART ANK_2a 598 627 IPR002110 GO:0005515
Viun3g01028 946 SMART ANK_2a 637 666 IPR002110 GO:0005515
Viun3g01028 946 Coils Coil 862 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01028 Viun-Chr3 6358431 6365076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01028 209 946 CAMTA Transcription Factor Family AT2G22300 52.987 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01028 K21596 - gmx:100798875 1585.08