Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01026 ATGCCACCAAGTGGTTCACTTTTCTTATTTGATCGGAAGGTGCTGAGATACTTCAGAAAGGATGGCCACAACTGGAGGAAGAAAAAAGATGGAAAAACAGTAAGAGAAGCACATGAGAGACTAAAGGCTGGAAGTGTGGATGTGTTGCACTGTTACTATGCTCATGGAGAAGAAGATGAGAATTTTCAGAGACGTACATATTGGCTGCTTGAAGAGGAACTCTCTAACATTGTTCTAGTTCATTATCGACAAGTGAAGGGAGCCAAGGCAAACTATACGTGTGCTAAAGAAAATGAAGAATCTCTTCCTTGTGCTCAACACACTGACAAAATTATGCTCAAAGCAGAGATGGACTCTTCTTTTTCGTCCACACCTCATCCAAACAGTTACCAGGTTCCTTCACAAACTATGGATACAAGCATGAACAGTGCCCAAGTATCAGAATATGAAGAAGCTGAATCTGCATTCAATAGCCATGCAAGTTCTGAGTTTTATTCTTTCCTGGAGTTACAACGCCCTGTGGAGAAGATTATAGATCAACCTGCTGGTTCTTATTCTCCTCACCCACACATAAATGAGCAAAAGAAGTTACCCGTCAATGCTGAGGTGAATTACATCTCACTCACTCAAGACAGAAAAATCATAGACATTCATAATGGTGGATTGATATATGAATCCCCAAAACCCCTGGGATTTTCCTCATGGGAAGATATCTTAGAAAATAATGGAGGAAATCAACACATGCCTTTTCAGCCTTTATTTCCTGAAATGCAACCTGATGACATGGCAGTCAGTAGCAATTTTTGTCAAGGATATGACATAATGGTGCCACATTTGACCACCAGCATGGCTAAGCTGCATGACAATGGAAGTCTTATACAAGCTGAAGGAAGTTGGCAGGGATATAGTGTTGATTCTTTACGCGTGTCCAGTTGGCCTATAGACAATGTCCATTCAAGCTCAGCATGTGAGGCTAGTTGTAGCAACTGTGAGCATGAAGTTAATGAAGTTGATATTCAGGAATCCTTGGAACAGTCTCTTCTCCATCAACACAAACAAAACAAGGTTCTAATGCTAAATGATCCTCAAGAGATGCTTCTGAATACAAAAGAAAAACTAAAATCAGATTTTGAGGCCAGTAGAACCCTGGATGGAATAGAAGACACACCTTTCACTTTTAAAAGGACTCCGTTAGATGGATCCCCAGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTTAACCAATGGATGAGTAAAGAGCTTGGAGATGTAGAAGAATCAAATAAACCATCTACTTCTGGTGCTTATTGGGATACAGTTGAAAGTGAAAGTGAGGTTGGCAGCACAACTATTCCTTCCCAAGGGCACCTGGACACCTATGTATTGGATCCATCTGTTTCCAATGAGCAGCTTTTTAGCATTATTGACTATTCCCCAAGCTGGGCATTTGAAGGGTCAGAAGTTAAGATTATCATTTCTGGACGATTCTTAAGAAGCCAACAAGAAGCAGAACAATGTAAATGGTCATGCATGTTTGGTGAGGTAGAAGTGCCTGCAGTGATACTTGCAAAAGATGTTCTTTGCTGTCATACTCCTCCACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGCAGTGAAGTGCGAGAATTTGATTTCCAGGTCAACTGTACTCAAGAAATCAACACTGCAGCTAAGGATAGAGCCAGCATTTTTCTTACTCTTAGTAGACGATTTGGAGAACTGTTATCCCTGGGGCATGCCCTTCCTCAGAATTCAGATTCAATCAGTGAAAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCTTTGCTAAGGGGGGAGGATGATGTTTGGGACAAACTACTGGAACTTACTCAAGAGAAAGATTTTTCTCCAGAAGATTTGCAGGAGCAGCTGCTTCAAAATCTTCTAAAAGATAAGTTGCACGCATGGCTCCTTCAGAAAATTACAGAAGATGGGAAAGGCCCCAATGTATTGGATGAGGGTGGACAAGGTGTGCTTCATTTTGCTGCTGCTCTTGGCTACGATTGGGCCCTAGAACCCACAGTAGTTGCTGGTGTCAATGTGAACTTTCGTGACGTAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTATGGCAGGGAGCGCACAGTTGCTTTCCTCATATCTCTTGGCGCAGCACCTGGGTTGCTGACTGATCCATGTCCAGAACATCCTTCTGGTAGAACACCAGCTGATCTAGCTTCTACAAATGGGCATAAAGGAATTGCAGGGTATCTCGCAGAATCTTCACTTAGTGCACAACTCACTACTCTTGATTTGAACAAGGATGTGGGAGAAAATTCTGGAACCAAAGTGGTCCAAAGAACCCAAAACATTGCTCAAGTTAATGATCTTGATGGTCCATCATATGAACAGTCGCTGAAAGATTCATTGGCTGCAGTGTGCAATGCCACCCAAGCTGCGGCTCGGATTCATCAAGTCTTCAGAATGCAATCATTCCAGAGAAAGCAACTGAAGGAATTTGGTGATGACAAATTTGGAATATCTGATGAACGTGCTCTTTCACTTGTAAAAATGAATGGGAAATCACACAAGTCAGGATCACGCGATGAGCCGGTCCATGCTGCTGCAATACGTATCCAGAACAAATTCCGCGGTTGGAAGGGCAGAAAAGAATTTTTGATGATTCGACAACGTATAGTAAAAATTCAGGCTCATGTGAGAGGACACCAGGTTAGGAAAAATTGTGGGAAGATAATTTGGTCTGTTGGGATATTGGAGAAGGTTATTTTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGAGGATTTAAATCAGAGGCCAATTCTGAGGTAACTATGATACAAGATGTAACTTCCCCTGAGGATGACTATGATGTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGATTGCAGAAAGCCCTAGCCAGGGTGAAGTCAATGATTCAGTATCCAGAAGCAAGGGACCAATACCATAGGGTGCTGAATGTAGTGACTGAGATCCAAGAAAATCAGGTAAAGCATGATAGCAATTGTAACAATTCAGAAGAAATGAGAGACTTCAATAACCTCACTGATCTTGAAGCACTGTTGGACGAAGATATTTTCATGCCTACAGCAACTTAG 3174 0.4203 MPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEEDENFQRRTYWLLEEELSNIVLVHYRQVKGAKANYTCAKENEESLPCAQHTDKIMLKAEMDSSFSSTPHPNSYQVPSQTMDTSMNSAQVSEYEEAESAFNSHASSEFYSFLELQRPVEKIIDQPAGSYSPHPHINEQKKLPVNAEVNYISLTQDRKIIDIHNGGLIYESPKPLGFSSWEDILENNGGNQHMPFQPLFPEMQPDDMAVSSNFCQGYDIMVPHLTTSMAKLHDNGSLIQAEGSWQGYSVDSLRVSSWPIDNVHSSSACEASCSNCEHEVNEVDIQESLEQSLLHQHKQNKVLMLNDPQEMLLNTKEKLKSDFEASRTLDGIEDTPFTFKRTPLDGSPAEEGLKKLDSFNQWMSKELGDVEESNKPSTSGAYWDTVESESEVGSTTIPSQGHLDTYVLDPSVSNEQLFSIIDYSPSWAFEGSEVKIIISGRFLRSQQEAEQCKWSCMFGEVEVPAVILAKDVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVNCTQEINTAAKDRASIFLTLSRRFGELLSLGHALPQNSDSISENEKSQLRSKISSLLRGEDDVWDKLLELTQEKDFSPEDLQEQLLQNLLKDKLHAWLLQKITEDGKGPNVLDEGGQGVLHFAAALGYDWALEPTVVAGVNVNFRDVNGWTALHWAAFYGRERTVAFLISLGAAPGLLTDPCPEHPSGRTPADLASTNGHKGIAGYLAESSLSAQLTTLDLNKDVGENSGTKVVQRTQNIAQVNDLDGPSYEQSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQLKEFGDDKFGISDERALSLVKMNGKSHKSGSRDEPVHAAAIRIQNKFRGWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEANSEVTMIQDVTSPEDDYDVLKEGRKQTEQRLQKALARVKSMIQYPEARDQYHRVLNVVTEIQENQVKHDSNCNNSEEMRDFNNLTDLEALLDEDIFMPTAT 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01026 1057 ProSiteProfiles Ankyrin repeat region circular profile. 709 734 - -
Viun3g01026 1057 Gene3D - 632 796 IPR036770 -
Viun3g01026 1057 SUPERFAMILY E set domains 474 559 IPR014756 -
Viun3g01026 1057 Pfam Ankyrin repeats (3 copies) 681 776 IPR002110 GO:0005515
Viun3g01026 1057 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Viun3g01026 1057 Pfam IPT/TIG domain 474 548 IPR002909 -
Viun3g01026 1057 Gene3D Immunoglobulins 466 563 IPR013783 -
Viun3g01026 1057 FunFam Calmodulin-binding transcription activator 2 881 929 - -
Viun3g01026 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 931 IPR027417 -
Viun3g01026 1057 Pfam CG-1 domain 2 84 IPR005559 GO:0003677
Viun3g01026 1057 ProSiteProfiles IQ motif profile. 905 929 IPR000048 GO:0005515
Viun3g01026 1057 SMART CG_1_2 1 86 IPR005559 GO:0003677
Viun3g01026 1057 SMART iq_5 904 926 IPR000048 GO:0005515
Viun3g01026 1057 SMART iq_5 881 903 IPR000048 GO:0005515
Viun3g01026 1057 ProSiteProfiles CG-1 DNA-binding domain profile. 1 91 IPR005559 GO:0003677
Viun3g01026 1057 SUPERFAMILY Ankyrin repeat 654 770 IPR036770 -
Viun3g01026 1057 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1020 - -
Viun3g01026 1057 SMART ANK_2a 748 777 IPR002110 GO:0005515
Viun3g01026 1057 SMART ANK_2a 709 738 IPR002110 GO:0005515
Viun3g01026 1057 FunFam Calmodulin-binding transcription activator 2 467 563 - -
Viun3g01026 1057 Pfam IQ calmodulin-binding motif 907 924 IPR000048 GO:0005515
Viun3g01026 1057 Pfam IQ calmodulin-binding motif 883 902 IPR000048 GO:0005515
Viun3g01026 1057 FunFam Calmodulin-binding transcription activator 2 638 785 - -
Viun3g01026 1057 Gene3D - 880 928 - -
Viun3g01026 1057 ProSiteProfiles IQ motif profile. 883 911 IPR000048 GO:0005515
Viun3g01026 1057 Coils Coil 973 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01026 Viun-Chr3 6358425 6365076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01026 2 1038 CAMTA Transcription Factor Family AT5G64220 45.386 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun3g01026 Ank_2 2.4e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01026 K21596 - gmx:100798875 1799.25