Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01000 ATGACGCAGCAGAATGTGGTACCGTCCAAGACAAAATCCGGGATCAACAGGGACCTAGCGGTTGCGCAAAAGCCACCGGCGGCGCCGGGGGGCTACATTCCCATTCCGAGGAGGAGGGTTTTGAAGAACCTTGAGATCAATGGAGGACAAAGAATCAATGCATGGGTTGATTCCATGAGAGCCTCTTCTCCCACCCATGCCAAATCAACCTCTTCCTTCGCCGAAGAACACAGCTCTTGGATTCTTCGCCACCCTTCGGCATTAGACATGTTTGAGCAAATTATGGATGCATCCAGGGGAAAGCAAATCGTCATGTTCCTGGACTATGATGGTACTTTGTCACCTATTGTTGATGATCCAGACCGTGCTTTCATGTCGGATTCGATGAGGAAAACAGTGAGGAAACTTGCGAGGTGTTTTCCCACTGCTATAGTTACAGGCAGATGCAGAGACAAGGTTTACAATTTTGTGCGATTGGCTGAGCTATATTATGCTGGAAGCCATGGCATGGATATCCAAGGCCCAACAAGAGACTCCAAATACAGCAACAAAGACAAAGGAGAGCCAGTTCTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATAGACGAGGTGTACAATGAATTAGTTGAGAAAATGAAATCAATCCCTGGAGCAAGGGTGGAGAACAACAAGTTCTGCGTCTCTGTTCATTTTCGCTGCGTTGATGAAAAGAAATGGAGTGAACTGGCACAGGAAGTGAGATCAGTATTAAAAGAGTACCCGAAGCTTCGTCTTAACCAAGGAAGAAAGGTATTAGAGATTCGTCCATCCATTAAATGGGACAAAGGGAAAGCACTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTGTTTACATTGGAGATGATAAAACCGATGAAGATGCATTCAAGAAACTTAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCGAAATTCCCAAAGGACACTACTGCATCATACTCTTTACAAGAACCTAACGAGGTGATGGATTTCCTTCAACGATTGGTGGAATGGAAACAAGTATCCCTTCGTCTCCGAGCACGTTCCCGTGTGTAA 1101 0.4523 MTQQNVVPSKTKSGINRDLAVAQKPPAAPGGYIPIPRRRVLKNLEINGGQRINAWVDSMRASSPTHAKSTSSFAEEHSSWILRHPSALDMFEQIMDASRGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIQGPTRDSKYSNKDKGEPVLFQPASEFLPMIDEVYNELVEKMKSIPGARVENNKFCVSVHFRCVDEKKWSELAQEVRSVLKEYPKLRLNQGRKVLEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGFGILVSKFPKDTTASYSLQEPNEVMDFLQRLVEWKQVSLRLRARSRV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01000 366 Gene3D - 103 190 IPR023214 -
Viun3g01000 366 Gene3D - 200 362 IPR023214 -
Viun3g01000 366 FunFam Trehalose 6-phosphate phosphatase 201 360 - -
Viun3g01000 366 Pfam Trehalose-phosphatase 106 340 IPR003337 GO:0003824|GO:0005992
Viun3g01000 366 NCBIfam trehalose-phosphatase 101 351 IPR003337 GO:0003824|GO:0005992
Viun3g01000 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 33 359 IPR044651 GO:0004805|GO:0005992
Viun3g01000 366 CDD HAD_TPP 104 344 - -
Viun3g01000 366 NCBIfam HAD-IIB family hydrolase 105 316 IPR006379 -
Viun3g01000 366 FunFam Trehalose 6-phosphate phosphatase 103 190 - -
Viun3g01000 366 SUPERFAMILY HAD-like 104 353 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01000 Viun-Chr3 6187342 6190286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01000 94 357 Trehalose Biosynthesis Gene Families AT1G06410 24.382 5.51e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01000 K01087 - gmx:100788735 671.774