Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00999 ATGGCAGCCGCTATAGATATGTACAACAACTGCAACGTCGTACAGGAATTCCTAGATCCGTACAGTGAGGAGCTGATGAAAGCACTTGAGCCTTTTGTCAAAACTGATTATTTCTCCGTCTCTTCTGATTCCGCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATTATTCTCTCGTTTCATCTACTTCGTATCCCTCCACCAACCAAATCAAGCTCAACCAACTCACCCCAGAGCAAATCCTCCAGATTCAGGCGCAGGTTGGGCTTCAGCAGCACATGGGTTATTCAACTCAACGTCAAAACCAAGCCCAGCTGGGTCCAAAACGTGTCGCCATGAAGCACGGTGGCGCGGCGGCGAAAGCCGCGAAGCTGTACCGAGGGGTGCGGCAACGGCATTGGGGGAAGTGGGTCGCCGAGATCAGACTCCCGAAGAACCGCACGCGCCTATGGCTGGGAACATTCGACACCGGAGAAGAAGCGGCGTTGGCGTACGACAACGCAGCGTTTAAGCTCAGAGGCGAGTTCGCGCGCCTCAACTTCCCTCATCTGCGACACCAGGGAGCGTTCGTATTGGGCGAATTCGGAGATTACAAGCCGCTACCTTCTTCCGTCGACTCCAAGCTCCAAGCTATTTGCGAGAGCTTGGCCAAACAAGAACAGCAAAAAACGTGTTGCTCTGTCGAAGACGTGAAGCCCGAGGTCCACGCTGCTGCTGAGCTGGCACTGCTGGAGTCTGACGTGGCGCAATCCAACGTTTGTCCCGAGTTCGACAATTTTAAGGTAGAAAACGGGAACGAGAACCCATTGTTATCATCGCCTGTGTCCGGCGGCGAGTCTTCTTCGCCTGAATCGGGTGTGACTTTCTTGGATTTCTCGGATTTCTCGGATTTCTCACGTTGTAATTATGAGTGGGATGAAATGGAGAGTTTTGGGTTGGAGAAGTACCCTTCGGTGGAGATTGATTGGGCAGCTATATGA 990 0.5192 MAAAIDMYNNCNVVQEFLDPYSEELMKALEPFVKTDYFSVSSDSASSSSSSSSSSSSSDYSLVSSTSYPSTNQIKLNQLTPEQILQIQAQVGLQQHMGYSTQRQNQAQLGPKRVAMKHGGAAAKAAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVLGEFGDYKPLPSSVDSKLQAICESLAKQEQQKTCCSVEDVKPEVHAAAELALLESDVAQSNVCPEFDNFKVENGNENPLLSSPVSGGESSSPESGVTFLDFSDFSDFSRCNYEWDEMESFGLEKYPSVEIDWAAI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00999 329 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
Viun3g00999 329 SUPERFAMILY DNA-binding domain 128 186 IPR016177 GO:0003677
Viun3g00999 329 MobiDBLite consensus disorder prediction 43 62 - -
Viun3g00999 329 Gene3D AP2/ERF domain 128 186 IPR036955 GO:0003700|GO:0006355
Viun3g00999 329 SMART rav1_2 128 191 IPR001471 GO:0003700|GO:0006355
Viun3g00999 329 FunFam Ethylene-responsive transcription factor 2 127 186 - -
Viun3g00999 329 CDD AP2 129 187 IPR001471 GO:0003700|GO:0006355
Viun3g00999 329 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Viun3g00999 329 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Viun3g00999 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 329 - -
Viun3g00999 329 ProSiteProfiles AP2/ERF domain profile. 128 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00999 Viun-Chr3 6153169 6154733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00999 3 329 AP2-EREBP Transcription Factor Family AT4G39780 48.795 1.09e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g00999 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00999 K09286 - gmx:100818839 425.631