Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00971 ATGACAAGGTCTGTGTGTGAGTTCTTGTATGAGCTTTATGCCAAGACCATAGTCCTTGTAACATACATGCTAATACAACTTATCCTTATCATTCGCTACCTTAAGTCAAACACACCTGCAATATCGACCACCCAATACCTCAGTTTCATCGAAGAGAAGAACCCCGCAATTCGTTGCACCACCAGACTCAAAGCAGAGCACATAGACTGCAGAGTGTGTCTCTCTGAGTTCCAGGAAGGGGAGAAGGTGAGGAACCTCAACTGCAGACACACTTTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTCTGCAGACACAAGGTTTTGCCAGATCATGTTGTCGCCAACTACAACCTCCTTCAAAATCAGGTACAAGAAGAAGAAGAGTACGATGGCAATGATCACCAACTCATCTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCACACGTATCTCTGA 486 0.4506 MTRSVCEFLYELYAKTIVLVTYMLIQLILIIRYLKSNTPAISTTQYLSFIEEKNPAIRCTTRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRHKVLPDHVVANYNLLQNQVQEEEEYDGNDHQLIFLLSALRGGSTLHTYL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00971 161 Coils Coil 158 161 - -
Viun3g00971 161 SUPERFAMILY RING/U-box 49 123 - -
Viun3g00971 161 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Viun3g00971 161 PANTHER - 4 156 - -
Viun3g00971 161 SMART ring_2 70 111 IPR001841 -
Viun3g00971 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 117 IPR013083 -
Viun3g00971 161 Pfam Ring finger domain 69 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00971 Viun-Chr3 5973926 5975077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00971 69 122 C3H Transcription Factor Family AT1G15100 57.407 4.58e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00971 K16282 - gmx:102669811 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00971 3 5973926 5975077 Viun3g00971 3 5973926 5975077 ECH
Viun3g00971 3 5973926 5975077 Viun1g03298 1 40588025 40588898 PCT