Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00970 ATGACCGATTCTTCTCCTCTTCTCCCTCCATCACCGGTTACTGAGATCGACCTTGAAGCCGCTCCCTCCCAACAAATTCAATGCCGGATTTGTCTTGAAACTGACGGTAGAGATTTCATTGCCCCTTGCAAATGCAAAGGGACGTCAAAGTATGTACATCGAGAGTGTTTGGATCATTGGCGAGCGGTTAAGGAAGGGTTTGCGTTTGCTCACTGCACTACCTGCAAGGCTCAATACCATTTGAGTGTTCATGATGCTTACAGAAAATGGCGTACTTTCAAATTTCGGTTTTTTGTAACCAGAGACATTTTGTTTATATTTTTGGCTGTACAGCTTGTGATTGCTGCACTGGCCTATTTGGTTTATCTGATAGATGGTTCCCAGCAGTATCAGCTTCGTCTTGTTTTCGGTTTTGATAATGTGTTGAGCTTTTACTATATATGTGGAGCAGTGTTGTTTTTTGTGTTTATTGGCCTCTCTGGATGCTTTATCACTTGTTCTGATCGAGCAGTTCTCAATGATTTGGATCAGCCTTGTCGAGAAATATGTCTTTGTTGCTGTCAACCCGGAGTTCGTGCCAACTATAATTATGGAGGTACTTCTTTCACGTGGCTTGAATGTAATTCATGCTTGGAGAGTTGCGGAAACATGGAAACGGAATGTTGTGGTTGCATGAGAGGTTCCGAGGATACAGAGCTACCAGTACTACTCATAATGGCTTTGATTTTTGTAGTACTCTTTACTGTAATTGGGATATTTTACAGTGTATTAGTGGCTACAATGGTAGGACAACGGATATGGCAGCGTCATCATCACATACTTGCAAAAAGGATGCTAACAAAGGAGTACGTGGTTGAAGACATTGATGGAGAGATAACAGGACCTGATTGGTGTCCTCCATCCATCCCTGCGGAGCATGTACAGCACCTCAAAACATTGGGCCTCCTATGA 951 0.4301 MTDSSPLLPPSPVTEIDLEAAPSQQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAQYHLSVHDAYRKWRTFKFRFFVTRDILFIFLAVQLVIAALAYLVYLIDGSQQYQLRLVFGFDNVLSFYYICGAVLFFVFIGLSGCFITCSDRAVLNDLDQPCREICLCCCQPGVRANYNYGGTSFTWLECNSCLESCGNMETECCGCMRGSEDTELPVLLIMALIFVVLFTVIGIFYSVLVATMVGQRIWQRHHHILAKRMLTKEYVVEDIDGEITGPDWCPPSIPAEHVQHLKTLGLL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00970 316 Pfam RING-variant domain 28 75 IPR011016 GO:0008270
Viun3g00970 316 CDD RING_CH-C4HC3_MARCH 28 76 - -
Viun3g00970 316 SMART ringv_2 27 76 IPR011016 GO:0008270
Viun3g00970 316 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 315 - -
Viun3g00970 316 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Viun3g00970 316 SUPERFAMILY RING/U-box 24 80 - -
Viun3g00970 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00970 Viun-Chr3 5959138 5962201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00970 5 316 C3H Transcription Factor Family AT2G22120 71.293 6.01e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00970 - - gmx:100791777 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00970 3 5959138 5962201 Viun3g00970 3 5959138 5962201 ECH
Viun3g00970 3 5959138 5962201 Viun1g03297 1 40566419 40572140 PCT