Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00968 ATGGATGCTTCATCCTCACAGTTTGTTTCCTCAAGAAGAATGGAAGTGTATGATCCTATCCACCAAATTAGCATGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTTTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATAAAGTTTGATAATCAAGTTCAGGCGCAATCAGAGGAGGTTTCTCATGGAATATTTGGAACATCTGTGAAGTACAACCAAGATCATAATAGACTGATTGATAAGACACAAAGACGTCTTGCTCAAAATCGAGAGGCTGCTCGAAAGAGTCGTTTGAGGAGAAAGGCGTACGTGCAACAGTTGGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGGAAGAGGTAGATCATGCTAAACGACAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAGCAACTTTTAAGATGGAGTATGAACTTTGGGTAGAGGAGCAAAACAGACATATCTTGGAAATAAGAACTGCTTTAAGTTCTGAGATAGGTGACATGCAACTGGGGAAACTTGTACAAAGCATAATGAACCACTATTCCAAACTCTTTACCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAACGATTCTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGATCCCTCTGAGTGAACCTTTGACAGAGCAACAACGGTTTGATACCTATGGCCTAGAAAAATCATGTCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCCAGGACACTTGGTTGAAGGAACTCACATTCCACAGATGGATACTGCAATGGAGAGATTGGAAGCTCTGGTGAGCTTTGTGAATCAGGCTGATCATCTACGACAAGAAACATTGCGACAAATGTATCGAATACTTAGCATACGTGAGATTGGTCAGTTTCTGGTTGTTCTAGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGAAAATCGTTCTCAAGATCACCTTATAGCAAACAAATACCAATAA 1122 0.4073 MDASSSQFVSSRRMEVYDPIHQISMWEENFKSNANTLTASTSIIEELDIKFDNQVQAQSEEVSHGIFGTSVKYNQDHNRLIDKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLMQLEEEVDHAKRQGLYIGDGLGSNNLGFAGSVNSGIATFKMEYELWVEEQNRHILEIRTALSSEIGDMQLGKLVQSIMNHYSKLFTMKSAAAKADVFYVMSGMWMTTAERFFLWIGGFRPSELLKVLIPLSEPLTEQQRFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGPGHLVEGTHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILSIREIGQFLVVLGEYFQRLRALSKLWENRSQDHLIANKYQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00968 373 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Viun3g00968 373 SMART brlzneu 78 139 IPR004827 GO:0003700|GO:0006355
Viun3g00968 373 SUPERFAMILY Leucine zipper domain 83 123 IPR046347 GO:0003700|GO:0006355
Viun3g00968 373 Coils Coil 102 129 - -
Viun3g00968 373 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Viun3g00968 373 Coils Coil 265 285 - -
Viun3g00968 373 Coils Coil 74 94 - -
Viun3g00968 373 Pfam bZIP transcription factor 83 111 IPR004827 GO:0003700|GO:0006355
Viun3g00968 373 Gene3D - 82 131 - -
Viun3g00968 373 Pfam Seed dormancy control 171 244 IPR025422 GO:0006351|GO:0043565
Viun3g00968 373 FunFam BZIP family transcription factor 82 131 - -
Viun3g00968 373 PANTHER TRANSCRIPTION FACTOR TGA9 3 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00968 Viun-Chr3 5927736 5932419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00968 1 365 Calmodulin-binding Proteins AT5G65210 60.163 7.19e-161 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun3g00968 DOG1 3.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00968 K14431 - gmx:100780003 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00968 3 5927736 5932419 Viun3g00968 3 5927736 5932419 ECH
Viun3g00968 3 5927736 5932419 Viun1g03296 1 40551738 40555459 PCT