Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00955 ATGACAGGGAAGAGAAACCAGACAACAACATCATTAACAACAGCAACAACAACAAGTCCTGTGGGAAGTCCAACTTCTGGTAACATCTCAGACAGCTCCTCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAACGTTAGCCGCATCATGAAAAGGGCACTCCCGGCCAATGCAAAAATCTCCAAGGAAGCCAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATCAGCTTCATCACCGGTGAGGCCTCCGACAAGTGCCAGAGGGAAAAGAGGAAGACCATCAACGGTGATGATCTTCTCTGGGCCATGACAACCTTAGGGTTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTCAACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCCATGGCCAAACAAGATCAAGAACACTCTCCGACTCATCAAACCAATGATGGTTCTGCTGCAACCAAACCAGACTTCAACTCTTTCGGTGCTGCCTTCTATTCCGTGGGGCCTCAAGTAACTCCTCCGAAGAGCTTCACAGATATTGGAGGAATCAATGGTTATAGAGACACCTCCATCAACAGTGTCATTGCTCAAAGTGCGGTCAGTGGTGATCAAGATTCCACTGGTAACAGAATGATGCCACCCAACCTACGTTATAGGGTTGAATGGTAG 669 0.4723 MTGKRNQTTTSLTTATTTSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQDQEHSPTHQTNDGSAATKPDFNSFGAAFYSVGPQVTPPKSFTDIGGINGYRDTSINSVIAQSAVSGDQDSTGNRMMPPNLRYRVEW 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00955 222 MobiDBLite consensus disorder prediction 1 37 - -
Viun3g00955 222 FunFam Nuclear transcription factor Y subunit B-3 29 153 - -
Viun3g00955 222 Gene3D Histone, subunit A 27 156 IPR009072 GO:0046982
Viun3g00955 222 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Viun3g00955 222 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Viun3g00955 222 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Viun3g00955 222 MobiDBLite consensus disorder prediction 138 153 - -
Viun3g00955 222 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun3g00955 222 MobiDBLite consensus disorder prediction 129 153 - -
Viun3g00955 222 SUPERFAMILY Histone-fold 37 141 IPR009072 GO:0046982
Viun3g00955 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Viun3g00955 222 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00955 Viun-Chr3 5860352 5861357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00955 22 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.416 7.10e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun3g00955 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00955 K08065 - gmx:100810059 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00955 3 5860352 5861357 Viun3g00955 3 5860352 5861357 ECH