Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00948 ATGGCGCCGACGCAGAGAACGCGTAAGGTTAGCAGAAACCCTGAATTGATAAGGGGCATTGGGAAGTACTCGAGATCGCAGATGTACCACAAGAGGGGGATTTGGGCAATCAAGGCTAAAAACGGCGGCGTTTTCCCTCGCCATGACCCTACTCCCAAACCTCAATCTCCCGCTCTAAAACCTCCCAAATTTTACCCTGCCGATGATGTCAAGAAGCCCCTTCCCAACAAGCACAAACCCAGACTCACTAAGCTCAGGGATAGCGTTACCCCTGGGACAGTGTTGATTCTTCTTGCCGGTAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAGCAGCTTCCTTCCGGGTTGCTTCTTGTCACCGGTCCTTTCAAGATCAACGGAGTTCCATTGAGACGAGTGAACCAGTCATATGTTATTGCCACATCAACCAAAATAGATGTTTCTGCTGTTAACGTGGACAAATTTGATGACAAATACTTTTCAAAGGAGTCCAGCAAAAAGAAGAAGAAGGGAGAGGGCGAGTTTTTCGAGGCTGAGAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTTTGGACTCTGTATTGATAAAAGCCATAGAGAGTGTCCCGGACTTGAATGCTTATCTGGGTGCCAGGTTTTCCTTAAAAGCTGGTGTGAAACCTCATGAACTAGTCTTTTAG 702 0.4687 MAPTQRTRKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPTPKPQSPALKPPKFYPADDVKKPLPNKHKPRLTKLRDSVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKIDVSAVNVDKFDDKYFSKESSKKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTLDSVLIKAIESVPDLNAYLGARFSLKAGVKPHELVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00948 233 ProSitePatterns Ribosomal protein L6e signature. 127 145 IPR000915 GO:0003735|GO:0005840|GO:0006412
Viun3g00948 233 CDD KOW_RPL6 81 233 IPR041997 -
Viun3g00948 233 PANTHER 60S RIBOSOMAL PROTEIN L6 6 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Viun3g00948 233 MobiDBLite consensus disorder prediction 65 79 - -
Viun3g00948 233 Gene3D - 87 171 IPR014722 -
Viun3g00948 233 FunFam 60S ribosomal protein L6 87 171 - -
Viun3g00948 233 SUPERFAMILY Translation proteins SH3-like domain 86 173 IPR008991 -
Viun3g00948 233 MobiDBLite consensus disorder prediction 45 79 - -
Viun3g00948 233 Pfam Ribosomal protein L6, N-terminal domain 5 57 IPR005568 GO:0003735|GO:0005840|GO:0006412
Viun3g00948 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00948 Viun-Chr3 5813261 5814749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00948 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 77.253 1.08e-116 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00948 K02934 - gmx:100809343 368.237