Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00947 ATGCGACACGAGCCAAAATTAGGGTTTACGTTTTGTTGGTCGGAGGTAACAGCAATGGCGCCGGCGCAGAAAACGCGAAAGGTTAGCAGAAACCCCGAACTGATAAGGGGCATTGGGAAATACTCGAAATCGCAGATGTATCATAAGAGGGGAATTTGGGCTATCAAGGCTAAAAACGGTGGCGTTTTCCCTCGTCACGACCCTACTCCCAAACCTCAATCTCCCGCTCTAAAACCTCCCAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTTCTCAACAAGCACAAACCCAGACTCACTAAGCTCAGGGCCAGCGTTACCCCTGGGACAGTGTTGATTCTTCTTGCCGGTAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAGCAGCTTCCTTCTGGGTTGCTTCTTGTAACTGGTCCTTTCAAGATCAACGGAGTTCCATTGAGACGAGTGAACCAGTCATATGTTATTGCCACGTCCACCAAAGTAGATGTTTCTGCTGTTAACGTGGACAAATTTGATGACAAATACTTTTCAAAGGAGTCCAGCAAAAAGAAGAAGAAGGGAGAGGGAGAGTTTTTCGAGGCAGAAAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTGGACTCTGCATTGATAAAAGCCATAGAGAGTGTCCCGAACTTGAATGCTTATCTGGGTGCCAGGTTTTCCCTGAAGGATGGTGTGAAACCTCATGAGTTAGTCTTTTAG 756 0.4643 MRHEPKLGFTFCWSEVTAMAPAQKTRKVSRNPELIRGIGKYSKSQMYHKRGIWAIKAKNGGVFPRHDPTPKPQSPALKPPKFYPADDVKKPLLNKHKPRLTKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDKFDDKYFSKESSKKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDSALIKAIESVPNLNAYLGARFSLKDGVKPHELVF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00947 251 ProSitePatterns Ribosomal protein L6e signature. 145 163 IPR000915 GO:0003735|GO:0005840|GO:0006412
Viun3g00947 251 Pfam Ribosomal protein L6, N-terminal domain 23 75 IPR005568 GO:0003735|GO:0005840|GO:0006412
Viun3g00947 251 CDD KOW_RPL6 99 251 IPR041997 -
Viun3g00947 251 FunFam 60S ribosomal protein L6 105 189 - -
Viun3g00947 251 Pfam Ribosomal protein L6e 144 251 IPR000915 GO:0003735|GO:0005840|GO:0006412
Viun3g00947 251 Gene3D - 105 189 IPR014722 -
Viun3g00947 251 PANTHER 60S RIBOSOMAL PROTEIN L6 24 251 IPR000915 GO:0003735|GO:0005840|GO:0006412
Viun3g00947 251 SUPERFAMILY Translation proteins SH3-like domain 105 191 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00947 Viun-Chr3 5808991 5810521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00947 19 251 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 77.682 5.88e-116 330