Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00928 ATGTCAACAACTTCACATACCATTCCTCACCACACCTTTTTCGAGGAGCAGGATCAGATTCCTACACAGATGGGGTTCTTTCCCTTTCCTACAAACCTTACTTTGCCTCCTTTGGGTTGCCACCAATCCTCTTTGAAAACCTTCACCTCCATAACACCTTCTTCACTTGCCCTATCTCAACAAGATTCTTCTACCTCAAATCTATCACAAACCCTATTTCACAAGTCCACCTTTGGAGGACCTCAATTCCTCTCCTTGCATAGATCCACTCTGAATCCATGGGCACTGGGAGAAGTGAGTGATTGCTTGAGCAGTAAAAGAAGTGGATTTGATGATCATCATCATCTGGGAATTTCGGCCATGAAGATGAAGAAAATGAAGGCGAGAAGGAAGGTTAGAGAGCCTAGGTTTTGCTTCAAAACTATGAGCGATGTCGATGTATTGGACGATGGCTACAAGTGGAGAAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCAAGAAGCTATTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGAGTGGAACGCTTAGCGGAAGATCCAAGAATGGTGATAACAACCTATGAAGGGAGACATGTTCACTCTCCATCAAATGATCTTGAAGACTCTTCATCTCCATCTCAACTTGGGAACTTCTTATGGTAG 678 0.4381 MSTTSHTIPHHTFFEEQDQIPTQMGFFPFPTNLTLPPLGCHQSSLKTFTSITPSSLALSQQDSSTSNLSQTLFHKSTFGGPQFLSLHRSTLNPWALGEVSDCLSSKRSGFDDHHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSSSPSQLGNFLW 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00928 225 MobiDBLite consensus disorder prediction 210 225 - -
Viun3g00928 225 Pfam WRKY DNA -binding domain 149 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00928 225 SUPERFAMILY WRKY DNA-binding domain 140 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g00928 225 ProSiteProfiles WRKY domain profile. 143 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00928 225 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 209 IPR044810 GO:0003700
Viun3g00928 225 SMART WRKY_cls 148 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00928 225 MobiDBLite consensus disorder prediction 204 225 - -
Viun3g00928 225 FunFam WRKY transcription factor 57 134 208 - -
Viun3g00928 225 Gene3D WRKY domain 135 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00928 Viun-Chr3 5675997 5677802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00928 118 225 WRKY Transcription Factor Family AT4G39410 77.876 1.54e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g00928 WRKY 9.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00928 - - pvu:PHAVU_002G266400g 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00928 3 5675997 5677802 Viun3g00928 3 5675997 5677802 ECH