Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00908 ATGGCAAGAGAGATAATGATTCTGCAGAAGCTGGATCATCCCAATGTCATCAAACTCAAAGGACTTGCAACATCAAGGATGCAGTATAGTCTTTATCTTGTTTTTCGTTACATGCACTCTGATCTTACTACAATCATCTCTCGTCCTACGGATAAACTCACTGAACCACAGATCAAGTGTTATATGCAGCAATTGCTTCTGGGGCTACAGCACTGTCATGAGAGAGGAGTTATGCATAGAGATATTAAACCTTCCAACTTGTTGGTAGACAAAAAGGGAGTGCTAAAAATTGCAGATTTTGGGTTAGCAAATTCTTTTGCTATGAAACCTGAAGGGCCTTTCACAAATCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTGGGTTCAACAGATTATGGATATGAAATTGATCTATGGAGTGCAGGGTGCTTGTTGGCTGAGATGTTCCTTGGAAGGCCACTTATGCCTGGGAGAACAGAGGTTGAACAACTTCACATGATCTTCAAACTTTGTGGTACACCTTCTGCGGATTATTGGATGAGAAGGAAGCTAACGACAAGCTTATTTCCACCACTACATTACAAAGCTAACTATGACGAAAACTTTAAGGATTTTCCTTCCTCTGCTTCTTCTCTCTTGACTACACTTCTTCATCTAGACTCTCATGCACGTGCCACAGCTGCTTCTGCTCTTCAAAGCCAATTTTTCAAGTCAAGTCCATTAGCATGTGACGTTTCAGCTTTAGCAGTAATATACAAAGACGAGGATGAATACTCACAAACAAAAAGACGAAAAAGGCGAAAGGGTCTGAAAAACAAAGGGCATGTATTTCAAACAAGTGCATGCAACATGAACCAATCACGAAAGAACAATACTTCTGAACAAAGCAGGAGAGACTCCGAATCATCATTGAAAGGGAAGAGTGTGGCACAAGACATGAAAGGTGAAGAAATTGAAAAAAGTGAAAGCAAGACATGGTCAGATTTTATGAAGGAGAGGAGCACGAGCATGGATGCATCTATATCCCCAGTTTTTCTCTCCAGTGTGAGAAAATCTCCTAAAACAGAGGGCCATCCTAATGCTCTTAAGAACATAAAAAACTATACCCTTTTACAAGCCTCAATAATTGATATGATCAATCGCAATGAAGGCAATGAAATTGGTCCATTGCGTAAGTCCTTTTCTGCATTGGATTTTCGCCTTCATCCAGACAAACTATCAAGCCTCTACTCCCAGTTCAGAAATTGA 1257 0.4041 MAREIMILQKLDHPNVIKLKGLATSRMQYSLYLVFRYMHSDLTTIISRPTDKLTEPQIKCYMQQLLLGLQHCHERGVMHRDIKPSNLLVDKKGVLKIADFGLANSFAMKPEGPFTNRVVTLWYRAPELLLGSTDYGYEIDLWSAGCLLAEMFLGRPLMPGRTEVEQLHMIFKLCGTPSADYWMRRKLTTSLFPPLHYKANYDENFKDFPSSASSLLTTLLHLDSHARATAASALQSQFFKSSPLACDVSALAVIYKDEDEYSQTKRRKRRKGLKNKGHVFQTSACNMNQSRKNNTSEQSRRDSESSLKGKSVAQDMKGEEIEKSESKTWSDFMKERSTSMDASISPVFLSSVRKSPKTEGHPNALKNIKNYTLLQASIIDMINRNEGNEIGPLRKSFSALDFRLHPDKLSSLYSQFRN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00908 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Viun3g00908 418 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00908 418 MobiDBLite consensus disorder prediction 263 333 - -
Viun3g00908 418 SUPERFAMILY Protein kinase-like (PK-like) 2 244 IPR011009 -
Viun3g00908 418 Gene3D Transferase(Phosphotransferase) domain 1 40 280 - -
Viun3g00908 418 MobiDBLite consensus disorder prediction 279 294 - -
Viun3g00908 418 MobiDBLite consensus disorder prediction 295 333 - -
Viun3g00908 418 FunFam Mitogen-activated protein kinase 38 249 - -
Viun3g00908 418 PANTHER CELL DIVISION PROTEIN KINASE 2 244 - -
Viun3g00908 418 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00908 418 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Viun3g00908 418 Pfam Protein kinase domain 2 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00908 Viun-Chr3 5621087 5624375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00908 3 271 Core Cell Cycle Gene Families AT5G10270 44.406 2.35e-77 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Viun3g00908 Pkinase 3.1e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00908 K08819 - gmx:102667260 667.922