Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00903 ATGGCGAATGGTAGAGAACAGGGTAACGAGGGTGAAGCGGGAGACTATCGTACGCTGTCAATGCCGATGATGTTTTCGGGGTTGGATAGGGAGAGGGAGATGTCAGCCATGGTCTCTGTTTTGACTCAAGTTGTGAGTGGAGATGAACATAGTCATGATCACTCCATTCTTCATCAAAACATTGACAACAATGGAAACGGAGGTGGTGATGGTCTTACTATTACATCGAACATAGATTCTGGTTCCATCACAGCATCTTCTGCATCTTCATCTTACGGTGGAAACTCTGTTCTCAAGAGAAGGAGGGAAGTTGATACAAGTGATCCTCCAGGTGGAACTTCTTTCCCTGCTATTTCAACATATGGAGTTGGCGAAAGTTCAAGCAGGGTGTACGATTACGAGTACAGGGCAGAGAGGATGGGAGTGGGAGAGGAACCAAAGAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCGGAAATAAGGGACCCATTCAAGGCTACCAGAGTCTGGTTAGGAACATTCGAGACTGCTGAGGATGCAGCCAGAGCCTACGATGAAGCTTCCTTACGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTCAGGCTCAGACACCCATCACCGCAACCACCACCACCACCACCCACCCTTTTCTCCATTCCGTCTACAACTCAACCCATTGTTCACACTCAGCCTCAAGCTCAGAGTTCACGTGATTACGGCAACTTTTACGAATATTGTTATTCGCATGTTCATGAGTTTCCCGTGAGCCTCTATGACCAGGTTGCCGTCTCATCACCATTCTCTGCGGCGGCTTCTCATCTTCAATCTTCACCTTCCTATTCTTCTTCCTCAACTATCACTTCTTCCCAACCACCTCTTCCTTCTACTTATGCCCCTGCTTACACTAATACCTCCCACCCTTCCGCCTCATAG 960 0.4823 MANGREQGNEGEAGDYRTLSMPMMFSGLDREREMSAMVSVLTQVVSGDEHSHDHSILHQNIDNNGNGGGDGLTITSNIDSGSITASSASSSYGGNSVLKRRREVDTSDPPGGTSFPAISTYGVGESSSRVYDYEYRAERMGVGEEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDEASLRFRGNKAKLNFPENVRLRHPSPQPPPPPPTLFSIPSTTQPIVHTQPQAQSSRDYGNFYEYCYSHVHEFPVSLYDQVAVSSPFSAAASHLQSSPSYSSSSTITSSQPPLPSTYAPAYTNTSHPSAS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00903 319 FunFam Ethylene-responsive transcription factor 2 148 207 - -
Viun3g00903 319 PANTHER DNA-BINDING DOMAIN 120 277 IPR044808 GO:0003700|GO:0009873
Viun3g00903 319 SMART rav1_2 149 212 IPR001471 GO:0003700|GO:0006355
Viun3g00903 319 MobiDBLite consensus disorder prediction 282 319 - -
Viun3g00903 319 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Viun3g00903 319 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Viun3g00903 319 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Viun3g00903 319 Pfam AP2 domain 149 198 IPR001471 GO:0003700|GO:0006355
Viun3g00903 319 CDD AP2 149 208 IPR001471 GO:0003700|GO:0006355
Viun3g00903 319 ProSiteProfiles AP2/ERF domain profile. 149 206 IPR001471 GO:0003700|GO:0006355
Viun3g00903 319 MobiDBLite consensus disorder prediction 84 120 - -
Viun3g00903 319 Gene3D AP2/ERF domain 148 208 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00903 Viun-Chr3 5586522 5588178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00903 24 244 AP2-EREBP Transcription Factor Family AT5G64750 39.695 1.08e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g00903 AP2 3.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00903 - - var:108344045 432.565