Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00902 ATGGCGAATGGTAGAGAACAGGGTAACGAGGGTGAAGCGGGAGACTATCGTACGCTGTCAATGCCGATGATGTTTTCGGGGTTGGATAGGGAGAGGGAGATGTCAGCCATGGTCTCTGTTTTGACTCAAGTTGTGAGTGGAGATGAACATAGTCATGATCACTCCATTCTTCATCAAAACATTGACAACAATGGAAACGGAGGTGGTGATGGTCTTACTATTACATCGAACATAGATTCTGGTTCCATCACAGCATCTTCTGCATCTTCATCTTACGGTGGAAACTCTGTTCTCAAGAGAAGGAGGGAAGTTGATACAAGTGATCCTCCAGGTGGAACTTCTTTCCCTGCTATTTCAACATGTAAGCATCAAAATGGAGTTGGCGAAAGTTCAAGCAGGGTGTACGATTACGAGTACAGGGCAGAGAGGATGGGAGTGGGAGAGGAACCAAAGAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCGGAAATAAGGGACCCATTCAAGGCTACCAGAGTCTGGTTAGGAACATTCGAGACTGCTGAGGATGCAGCCAGAGCCTACGATGAAGCTTCCTTACGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTCAGGCTCAGACACCCATCACCGCAACCACCACCACCACCACCCACCCTTTTCTCCATTCCGTCTACAACTCAACCCATTGTTCACACTCAGCCTCAAGCTCAGAGTTCACGTGATTACGGCAACTTTTACGAATATTGTTATTCGCATGTTCATGAGTTTCCCGTGAGCCTCTATGACCAGGTTGCCGTCTCATCACCATTCTCTGCGGCGGCTTCTCATCTTCAATCTTCACCTTCCTATTCTTCTTCCTCAACTATCACTTCTTCCCAACCACCTCTTCCTTCTACTTATGCCCCTGCTTACACTAATACCTCCCACCCTTCCGCCTCATAG 972 0.4805 MANGREQGNEGEAGDYRTLSMPMMFSGLDREREMSAMVSVLTQVVSGDEHSHDHSILHQNIDNNGNGGGDGLTITSNIDSGSITASSASSSYGGNSVLKRRREVDTSDPPGGTSFPAISTCKHQNGVGESSSRVYDYEYRAERMGVGEEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDEASLRFRGNKAKLNFPENVRLRHPSPQPPPPPPTLFSIPSTTQPIVHTQPQAQSSRDYGNFYEYCYSHVHEFPVSLYDQVAVSSPFSAAASHLQSSPSYSSSSTITSSQPPLPSTYAPAYTNTSHPSAS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00902 323 ProSiteProfiles AP2/ERF domain profile. 153 210 IPR001471 GO:0003700|GO:0006355
Viun3g00902 323 MobiDBLite consensus disorder prediction 286 323 - -
Viun3g00902 323 MobiDBLite consensus disorder prediction 84 118 - -
Viun3g00902 323 CDD AP2 153 212 IPR001471 GO:0003700|GO:0006355
Viun3g00902 323 PANTHER DNA-BINDING DOMAIN 125 281 IPR044808 GO:0003700|GO:0009873
Viun3g00902 323 FunFam Ethylene-responsive transcription factor 2 152 211 - -
Viun3g00902 323 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Viun3g00902 323 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Viun3g00902 323 PRINTS Ethylene responsive element binding protein signature 176 192 IPR001471 GO:0003700|GO:0006355
Viun3g00902 323 Gene3D AP2/ERF domain 152 212 IPR036955 GO:0003700|GO:0006355
Viun3g00902 323 Pfam AP2 domain 153 202 IPR001471 GO:0003700|GO:0006355
Viun3g00902 323 SMART rav1_2 153 216 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00902 Viun-Chr3 5586521 5588178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00902 24 275 AP2-EREBP Transcription Factor Family AT5G64750 36.700 2.50e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g00902 AP2 3.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00902 - - var:108344045 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00902 3 5586521 5588178 Viun3g00902 3 5586521 5588178 ECH
Viun3g00902 3 5586521 5588178 Viun9g01858 9 28279433 28280909 ECH