Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00901 ATGGCGAATGGTAGAGAACAGGGTAACGAGGGTGAAGCGGGAGACTATCGTACGCTGTCAATGCCGATGATGTTTTCGGGGTTGGATAGGGAGAGGGAGATGTCAGCCATGGTCTCTGTTTTGACTCAAGTTGTGAGTGGAGATGAACATAGTCATGATCACTCCATTCTTCATCAAAACATTGACAACAATGGAAACGGAGGTGGTGATGGTCTTACTATTACATCGAACATAGATTCTGGTTCCATCACAGCATCTTCTGCATCTTCATCTTACGGTGGAAACTCTGTTCTCAAGAGAAGGAGGGAAGTTGATACAAGTGATCCTCCAGATGGAGTTGGCGAAAGTTCAAGCAGGGTGTACGATTACGAGTACAGGGCAGAGAGGATGGGAGTGGGAGAGGAACCAAAGAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCGGAAATAAGGGACCCATTCAAGGCTACCAGAGTCTGGTTAGGAACATTCGAGACTGCTGAGGATGCAGCCAGAGCCTACGATGAAGCTTCCTTACGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTCAGGCTCAGACACCCATCACCGCAACCACCACCACCACCACCCACCCTTTTCTCCATTCCGTCTACAACTCAACCCATTGTTCACACTCAGCCTCAAGCTCAGAGTTCACGTGATTACGGCAACTTTTACGAATATTGTTATTCGCATGTTCATGAGTTTCCCGTGAGCCTCTATGACCAGGTTGCCGTCTCATCACCATTCTCTGCGGCGGCTTCTCATCTTCAATCTTCACCTTCCTATTCTTCTTCCTCAACTATCACTTCTTCCCAACCACCTCTTCCTTCTACTTATGCCCCTGCTTACACTAATACCTCCCACCCTTCCGCCTCATAG 930 0.4849 MANGREQGNEGEAGDYRTLSMPMMFSGLDREREMSAMVSVLTQVVSGDEHSHDHSILHQNIDNNGNGGGDGLTITSNIDSGSITASSASSSYGGNSVLKRRREVDTSDPPDGVGESSSRVYDYEYRAERMGVGEEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDEASLRFRGNKAKLNFPENVRLRHPSPQPPPPPPTLFSIPSTTQPIVHTQPQAQSSRDYGNFYEYCYSHVHEFPVSLYDQVAVSSPFSAAASHLQSSPSYSSSSTITSSQPPLPSTYAPAYTNTSHPSAS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00901 309 MobiDBLite consensus disorder prediction 272 309 - -
Viun3g00901 309 Gene3D AP2/ERF domain 138 198 IPR036955 GO:0003700|GO:0006355
Viun3g00901 309 Pfam AP2 domain 139 188 IPR001471 GO:0003700|GO:0006355
Viun3g00901 309 ProSiteProfiles AP2/ERF domain profile. 139 196 IPR001471 GO:0003700|GO:0006355
Viun3g00901 309 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Viun3g00901 309 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Viun3g00901 309 FunFam Ethylene-responsive transcription factor 2 138 197 - -
Viun3g00901 309 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Viun3g00901 309 SMART rav1_2 139 202 IPR001471 GO:0003700|GO:0006355
Viun3g00901 309 PANTHER DNA-BINDING DOMAIN 109 267 IPR044808 GO:0003700|GO:0009873
Viun3g00901 309 MobiDBLite consensus disorder prediction 84 120 - -
Viun3g00901 309 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00901 Viun-Chr3 5586520 5588178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00901 24 234 AP2-EREBP Transcription Factor Family AT5G64750 40.426 8.08e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g00901 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00901 - - var:108344045 404.445