Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00899 ATGGACTTCGACGAGTACGAATACCTGGAAAAGACAGTGGAGGAAGACGTAGATTCCTCCAAGAAGAAGAAGGACATCACGGACAAGATCGAGAGAAGTTACCGGAAGCGCGACGTCGACGACGATCTCCACGCCGACGACAGAAGGAGCAAGAGGAGGGGCGACGACGACAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGGGATAGGGACAGAGAACGGGAACGTGACCGTTCCTCCGGTCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGGGAGAGGAGGGATAAGGATAAGGACAAGGATAGGGATAGGAGAGATCGTGATAGGGATAAAGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAGGGAACGAGAGGAGAGAGAGAGATCCAGAAGGAGCGGGAGTCGCTCCGAGAGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGATTTAGGGATAAGAAAGAGGCCGTGGAACCCGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCATTAAAAGCAACCGAGAGAGATGTGTATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAACGCTTCTGGTGGAGTAGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAATATGACGGAGAGTCAGCTACGGGAGATTTTTGAGCCATTCGGTCCTGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGCCAAGATACCACTGCAAAATCGGCAGACTTAGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCCAGAGCATTGCTTATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTGTTAGCTTACCTATTGGTGCACCAGGTCTTCCAGCGCAAGTTATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCGAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTAGCACTGAGTCGGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGCGCAGGTTTTGTCTATTTGCAATTTGAAACAGTGGAAGCAGCGAGTGCTGCTCAACATGCAATGCACATGAGATGGTTTGCACGAAGGTTAATTTCAGCAATCTTCATGCAACCACAATTATATGAATCCAAGTTTAAAGGGGAGTGA 1629 0.4739 MDFDEYEYLEKTVEEDVDSSKKKKDITDKIERSYRKRDVDDDLHADDRRSKRRGDDDNGGSKKDRDRDRDRDRERERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDRDRRDRDRDKEKERERRERDREREERERSRRSGSRSERDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGVAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQQAVSLPIGAPGLPAQVMPTPVVEPVGSPSECLLLKNMFDPSTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLQFETVEAASAAQHAMHMRWFARRLISAIFMQPQLYESKFKGE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00899 542 MobiDBLite consensus disorder prediction 13 155 - -
Viun3g00899 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 252 IPR000504 GO:0003723
Viun3g00899 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 357 IPR000504 GO:0003723
Viun3g00899 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 472 525 IPR000504 GO:0003723
Viun3g00899 542 CDD RRM3_RBM39_like 448 530 - -
Viun3g00899 542 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 378 467 IPR029123 -
Viun3g00899 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 363 IPR000504 GO:0003723
Viun3g00899 542 MobiDBLite consensus disorder prediction 1 155 - -
Viun3g00899 542 SUPERFAMILY RNA-binding domain, RBD 176 263 IPR035979 GO:0003676
Viun3g00899 542 SMART rrm1_1 286 359 IPR000504 GO:0003723
Viun3g00899 542 SMART rrm1_1 184 256 IPR000504 GO:0003723
Viun3g00899 542 SMART rrm1_1 450 527 IPR000504 GO:0003723
Viun3g00899 542 SUPERFAMILY RNA-binding domain, RBD 445 530 IPR035979 GO:0003676
Viun3g00899 542 CDD RRM1_RBM39_like 184 256 - -
Viun3g00899 542 SUPERFAMILY RNA-binding domain, RBD 284 363 IPR035979 GO:0003676
Viun3g00899 542 Gene3D - 176 270 IPR012677 -
Viun3g00899 542 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 539 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun3g00899 542 Gene3D - 445 542 IPR012677 -
Viun3g00899 542 Gene3D - 281 377 IPR012677 -
Viun3g00899 542 FunFam Splicing factor CC1-like 109 268 - -
Viun3g00899 542 FunFam Splicing factor CC1-like 269 374 - -
Viun3g00899 542 NCBIfam splicing factor, CC1-like family 65 539 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun3g00899 542 Coils Coil 118 143 - -
Viun3g00899 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00899 Viun-Chr3 5562116 5570310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00899 284 358 Eukaryotic Initiation Factors Gene Family AT4G34110 40.789 8.50e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00899 K13091 - gmx:100818613 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00899 3 5562116 5570310 Viun9g01853 9 28183556 28189862 ECH
Viun3g00899 3 5562116 5570310 Viun3g00899 3 5562116 5570310 ECH
Viun3g00899 3 5562116 5570310 Viun9g01853 9 28183556 28189862 PCT