Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00895 ATGGATCCTAAGGATTTTCGATCCATATTGGAGAGCGCGGGCATCGACATTTGGATGTTGATGGATGTCGCCATCGCAGTGGCATCTGCTGACCACAGTGATGAATTGAAGCGTCGAAGAGACGGAATCGTGGAGCGCCTCTACGCGACGAGTTTGTTGTCATCATCGCGGTGTCCAAACTGTGACATCGACGACGTTAGAGAAATCGAGATGCAGAGCAATCCCTCCGCGGAGGAGGAAAAGGATACTTGCGAAGTCTTGTTGGACGATGAACAAAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCACCAGTCCAAAGATTCGTTGTTGGAGCTGTTGCAGAATCTAGCAGACATGGATATTACATTCCGAGCCTTACAAGAGACTGACATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGACGTTAAGAAATTGGTGAAGTTACTCGTCAGGAAATGGAAGGAGATTATAGATGAATGGGTGAAGTTGAAGACGCCAGGAGAAGCGAGTACTACTGTCATGGCTGACGAGGACTCGCCACAAGATAAAATGCCACAAAATGGACATCGTCAGATTCCCGATTTTGCAGACTCGCCAAATCCACACAATGAGAGTTTTGGGTCAGAGCACAACAACATTGAACCACAACAACGAAAACCAAAAGCAATTCCTCACAAAGAATCTCCCCTAAAACCATCGGCATCAAGACAAAAAGAGAGCAATGTTGAGTTGGATAAACTTGCTTCAGCGAGAAAGCGACTCCAAGAGAACTACAAAGAGCCAAAAAGAATAGAACGATCCAGGTGA 828 0.4577 MDPKDFRSILESAGIDIWMLMDVAIAVASADHSDELKRRRDGIVERLYATSLLSSSRCPNCDIDDVREIEMQSNPSAEEEKDTCEVLLDDEQKKILEIKEQLEDPHQSKDSLLELLQNLADMDITFRALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTPGEASTTVMADEDSPQDKMPQNGHRQIPDFADSPNPHNESFGSEHNNIEPQQRKPKAIPHKESPLKPSASRQKESNVELDKLASARKRLQENYKEPKRIERSR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00895 275 SMART TFS2_5 95 166 IPR003617 GO:0005634
Viun3g00895 275 CDD TFIIS_I 92 165 - -
Viun3g00895 275 Coils Coil 244 264 - -
Viun3g00895 275 MobiDBLite consensus disorder prediction 177 275 - -
Viun3g00895 275 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 87 178 IPR035441 -
Viun3g00895 275 ProSiteProfiles TFIIS N-terminal domain profile. 90 167 IPR017923 -
Viun3g00895 275 Pfam TFIIS helical bundle-like domain 115 164 IPR017923 -
Viun3g00895 275 MobiDBLite consensus disorder prediction 245 275 - -
Viun3g00895 275 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 174 IPR035441 -
Viun3g00895 275 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 274 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00895 Viun-Chr3 5514229 5516232 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun3g00895 Med26 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00895 - - gmx:100796457 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00895 3 5514229 5516232 Viun3g00895 3 5514229 5516232 ECH
Viun9g01844 9 28047386 28050568 Viun3g00895 3 5514229 5516232 ECH
Viun3g00895 3 5514229 5516232 Viun9g01844 9 28047386 28050568 PCT