Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00894 ATGGATCCTAAGGATTTTCGATCCATATTGGAGAGCGCGGGCATCGACATTTGGATGTTGATGGATGTCGCCATCGCAGTGGCATCTGCTGACCACAGTGATGAATTGAAGCGTCGAAGAGACGGAATCGTGGAGCGCCTCTACGCGACGAGTTTGTTGTCATCATCGCGGTGTCCAAACTGTGACATCGACGACGTTAGAGAAATCGAGATGCAGAGCAATCCCTCCGCGGAGGAGGAAAAGGATACTTGCGAAGTCTTGTTGGACGATGAACAAAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCACCAGTCCAAAGATTCGTTGTTGGAGCTGTTGCAGAATCTAGCAGACATGGATATTACATTCCGAGCCTTACAAGAGACTGACATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGACGTTAAGAAATTGGTGAAGTTACTCGTCAGGAAATGGAAGGAGATTATAGATGAATGGGTGAAGTTGAAGACGCCAGGAGAAGCGAGTACTACTGTCATGGCTGACGAGGACTCGCCACAAGATAAAATGCCACAAAATGGACATCGTCAGATTCCCGATTTTGCAGACTCGCCAAATCCACACAATGAGAGTTTTGGGTCAGAGCACAACAACATTGAACCACAACAACGAAAACCAAAAGCAATTCCTCACAAAGAATCTCCCCTAAAACCATCGGCATCAAGACAAAAAGAGAGCAATGTTGAGTTGGATAAACTTGCTTCAGCGAGAAAGCGACTCCAAGAGAACTACAAAGAGGTTGCAAATGCCAAAAAGAATAGAACGATCCAGGTGATGGATCTCCATGAGTTGCCAAAACCCAAGAATGCCTACTTCGGAAAAAGCAAAGGTGGCACCAGTCAGGGAAGACACTGGTGA 921 0.4604 MDPKDFRSILESAGIDIWMLMDVAIAVASADHSDELKRRRDGIVERLYATSLLSSSRCPNCDIDDVREIEMQSNPSAEEEKDTCEVLLDDEQKKILEIKEQLEDPHQSKDSLLELLQNLADMDITFRALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTPGEASTTVMADEDSPQDKMPQNGHRQIPDFADSPNPHNESFGSEHNNIEPQQRKPKAIPHKESPLKPSASRQKESNVELDKLASARKRLQENYKEVANAKKNRTIQVMDLHELPKPKNAYFGKSKGGTSQGRHW 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00894 306 Coils Coil 244 274 - -
Viun3g00894 306 SMART TFS2_5 95 166 IPR003617 GO:0005634
Viun3g00894 306 Pfam TFIIS helical bundle-like domain 115 164 IPR017923 -
Viun3g00894 306 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 174 IPR035441 -
Viun3g00894 306 CDD TFIIS_I 92 165 - -
Viun3g00894 306 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 87 178 IPR035441 -
Viun3g00894 306 ProSiteProfiles TFIIS N-terminal domain profile. 90 167 IPR017923 -
Viun3g00894 306 MobiDBLite consensus disorder prediction 177 255 - -
Viun3g00894 306 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 306 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00894 Viun-Chr3 5513957 5516230 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun3g00894 Med26 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00894 - - gmx:100796457 459.144