Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00886 ATGTCCGCCATGAACTCCAGTGTCTTGGCCTGTAACTATGCCAGATCAGGATGCTCCGATCTGAATGCGAAGCTCGCCTCCATGCCTTCGGTTGCATCTCCTCAAGTTTCTGCACTCAAGTTGCCTGTGATAAAGGCTCATCAAGCAAAGGTTACTGAATCTGAATCAAACCAAGGAAGAAGAAGTGCCCTTGTTTACTTAGCAGCTACCCTTTTCACTGCTGCAGCTGCTGCTTCCAACTCTTCAGCCAATGCAGGAATCATTGAAGAATACCTTGAAAAGAGCAAGACCAACAAGGAACTTAACGACAAGAAAAGATTAGCCACCACTGGAGCCAATTTTGCAAGAGCATACACTGTGGAATTTGGCACTTGCAAGTTCCCTGAAAACTTCACCGGTTGCCAAGATCTAGCTAAGCAAAAGGTAGTTTTGAACTTTCTTTTCAATGTGAAGGGAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGAAATGGACAACATTTTCCCGTGTCAAGCTTCTCCTTGA 537 0.4432 MSAMNSSVLACNYARSGCSDLNAKLASMPSVASPQVSALKLPVIKAHQAKVTESESNQGRRSALVYLAATLFTAAAAASNSSANAGIIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGTCKFPENFTGCQDLAKQKVVLNFLFNVKGRTNTSVVLMFSGNGEMDNIFPCQASP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00886 178 Gene3D - 86 155 IPR044907 -
Viun3g00886 178 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 143 IPR008796 GO:0009522|GO:0015979
Viun3g00886 178 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 42 143 IPR008796 GO:0009522|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00886 Viun-Chr3 5466121 5467141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00886 1 167 Calmodulin-binding Proteins AT5G64040 62.428 5.12e-68 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00886 K02701 - cave:132166062 196.438