Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun3g00885 | ATGTCCGCCATGAACTCCAGTGTCTTGGCCTGTAACTATGCCAGATCAGGATGCTCCGATCTGAATGCGAAGCTCGCCTCCATGCCTTCGGTTGCATCTCCTCAAGTTTCTGCACTCAAGTTGCCTGTGATAAAGGCTCATCAAGCAAAGGTTACTGAATCTGAATCAAACCAAGGAAGAAGAAGTGCCCTTGTTTACTTAGCAGCTACCCTTTTCACTGCTGCAGCTGCTGCTTCCAACTCTTCAGCCAATGCAGGAATCATTGAAGAATACCTTGAAAAGAGCAAGACCAACAAGGAACTTAACGACAAGAAAAGATTAGCCACCACTGGAGCCAATTTTGCAAGAGCATACACTGTGGAATTTGGCACTTGCAAGTTCCCTGAAAACTTCACCGGTTGCCAAGATCTAGCTAAGCAAAAGAAAGTGCCTTTTCTTTCTGATGATTTGGAGCTAGAATGTGAAGGGAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA | 513 | 0.4464 | MSAMNSSVLACNYARSGCSDLNAKLASMPSVASPQVSALKLPVIKAHQAKVTESESNQGRRSALVYLAATLFTAAAAASNSSANAGIIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW | 170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun3g00885 | 170 | PANTHER | PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC | 1 | 170 | IPR008796 | GO:0009522|GO:0015979 | |
| Viun3g00885 | 170 | Pfam | Photosystem I reaction centre subunit N (PSAN or PSI-N) | 42 | 170 | IPR008796 | GO:0009522|GO:0015979 | |
| Viun3g00885 | 170 | FunFam | Photosystem I reaction center subunit N | 86 | 170 | - | - | |
| Viun3g00885 | 170 | Gene3D | - | 86 | 170 | IPR044907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun3g00885 | Viun-Chr3 | 5466118 | 5467143 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun3g00885 | 1 | 141 | Calmodulin-binding Proteins | AT5G64040 | 63.194 | 8.26e-58 | 177 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun3g00885 | K02701 | - | cave:132166062 | 259.225 |