Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00882 ATGGAGTACGAGCAATTTGATTTTTCATTTGGCCCTCCTTACATGAACCAACTCCATGAGTATTGCTTAGAAAATGCATTCCCATTTCAAACAGAAGATATATCATCACCAAATACCATCATGGATGAAATGTTTGGTCAAGAATCTCTGGAGGGTTTGCTTCTGCAACACACAAACAACCAGGACTTTAGTTTCATGAATCACAATGATCCACCAGAGATTGAACTCTGCGATGGATTTGCCGAGGAAAATGTGCATGTTTCAATGGAAGAAGAAGAAGAAGAAGAAGGAGGGGATTCTTATTTGAAGGGAATCCAAGCAGAGCTGATGGAACAGACTAGTTTAGCTGATCTTTTGTTAACAGGAGCTGAAGCTGTAGAGGCACAGAACTGGGACCTTGCTTCAGACATAATCGAGAAACTCAACAATGAATCATCGTTAGAAAACGGTGATGGTTTATTGAACAGGTTGGCTCTTTTCTTTGCTCAGGGTCTGTATTATAAAAGTACAAATGACCCTGAACTGTTGCTGCAGCGTGGTGCTGTTTCTACACACACAGATGCTTTCTGTGTGTTTCAGGTTCTTCAAGAGCTATCTCCCTATGTGAAATTTGCTCACTTCACCGCAAACCAAGCCATCTTAGAAGCCACAGAAGGTGCTGAGAGTGTTCACATCGTTGATTTTGACATCATGGAGGGAATCCAGTGGCCACCCTTGATGGTGGATCTTGCAATGAGGAAAAGTGGTACTTCGCTCAGAGTATCAGCCATCACAGTGGACGAGAGAGGTGCTGCTTCTGCTCAACAAACAGGAAGAAGGCTCAAAGAGTTTGCAGCTTCTATCAACTTTCCTTTCATGTTTGATCAAATCATGATGGAAAGGGAAGAAGATATTCAAGGAATTGAAGTTGGTGAGACACTGGTAGTGAACTGTATGATACACCAGTGGATGCCTAACAGGAGCTTCTCACTGGTGAAAACATTTTTGGATGGTGTGAGCAAGTTGTGGCCGAGGCTTGTGGTTCTGGTGGAAGAAGAACTGTTTAATTTTTCTAGGCTGAAATCTATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACACTGCGGTTTGTGATTCACTTGGTAGTAGTGTGTGGGGTAGCCACAAGATGGAGTTGAGGGTGATAGAGAAAGAGATTTTGGGGCTCAGAATATTGGACAGTGTGAGGCAGTTTCCTTGTGAGAGAAATGAGAGAAAGGTTTGGGAAGAAGGGTTTTATTCCTTGGAAGGGTTTAAATGTGTTCCTATGAGTACTTGCAATATTTCACAAGCCAAGTTCTTGGTGAGCCTCTTTGGTGGAGGGTATTGGGTCCAATTCGAGAAGGGTAGGTTGGCCTTGTGTTGGAAGTCACGGCCTTTGACTGTGGCTTCAATCTGGGTACCCAAGGGTTATTAG 1443 0.4338 MEYEQFDFSFGPPYMNQLHEYCLENAFPFQTEDISSPNTIMDEMFGQESLEGLLLQHTNNQDFSFMNHNDPPEIELCDGFAEENVHVSMEEEEEEEGGDSYLKGIQAELMEQTSLADLLLTGAEAVEAQNWDLASDIIEKLNNESSLENGDGLLNRLALFFAQGLYYKSTNDPELLLQRGAVSTHTDAFCVFQVLQELSPYVKFAHFTANQAILEATEGAESVHIVDFDIMEGIQWPPLMVDLAMRKSGTSLRVSAITVDERGAASAQQTGRRLKEFAASINFPFMFDQIMMEREEDIQGIEVGETLVVNCMIHQWMPNRSFSLVKTFLDGVSKLWPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYTAVCDSLGSSVWGSHKMELRVIEKEILGLRILDSVRQFPCERNERKVWEEGFYSLEGFKCVPMSTCNISQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTVASIWVPKGY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00882 480 ProSiteProfiles GRAS family profile. 106 476 IPR005202 -
Viun3g00882 480 Pfam GRAS domain family 116 475 IPR005202 -
Viun3g00882 480 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 94 471 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00882 Viun-Chr3 5433250 5434825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00882 190 475 GRAS Transcription Factor Family AT1G55580 35.256 1.70e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun3g00882 GRAS 2.4e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00882 - - gmx:100804613 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00882 3 5433250 5434825 Viun3g00882 3 5433250 5434825 ECH