Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00880 ATGAGTTTGGAGGGGACAGAAAGTTCAGAAGATGGCGCAGGGTATCTGGAGCCTCCTGATCCTGACTGTGTTGAAATTGATCCAACTTGCACCTACATCAAGTACAAAGAGGTGATCGGCAGAGGAGCTTTTAAAACTGTTTACAAGGCATTTGATGAAGTCAATGGAATTGAGGTTGCATGGAGTCAGGTTCAGATTGATGAGGTGTTGAAATCCCCCGGTGACTTAGATAGGCTATATTCAGAATTACACCTCTTGAGATCACTGAAGCACAATAACATAGTAAGATTCTACAATTCCTGGATTGATGACAGGCGCAAGACCGTTAATATGATCACGGAGTTGTTTACCTCGGGTAGCCTCAAACAGTTTCGTAAAAGACACAAGAAGGTCGACTTGAAGGCCGTTAAAGGATGGGCAAGACAAATTTTAATGGGTCTAAGCTATCTCCACGGTCACAACCCACCAGTTATTCACAGGGACCTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTTGGGCTAGCAACTTTCTTGGATCGAAGTAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCACCCGAGCTGTATGATGAAAATTACAATGAATTAGCTGACATATATTCGTTTGGCATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCCGGTATAAAACCTGCTGCGCTTTCTAAAGTGAAAGATCCAGAAATGAAATCATTTATTGAGAAATGTCTAGTCCCAGCATCTCAAAGATTGTCAGCCAAGGAGCTTCTGATGGACCCATTTCTTCAAATGAATGCTTCAACAAAGAAGGGTCCTTTTCCATTGCCACATATTGTTCTTCCCAAATTGGGAGCCTCTGAAAGTCGTTGTATGGTGTCAGAAGGTCCTTCTAGTGCTCGTAATGGAGACATTTCAATGGATCTTGGTGACACCTGTGAGCTTCCACCGATCACTATATTTGATAAATCCACTGATGATGCATCATGTTCTACAAGTGTTGAGATAAGGAGGCAGAAGAGAGGTGATATTTTCTTTCTAAAAGGTGAAGAAAATGATAAGAACTCTGTATCATTGGTTCTGCGGATAGCTGACCAAGGAGGGCGAGCAAGAAATATCCATTTCATTTTCTACCTTGACAGTGACACTGCTGTCTCAGTTTCAAGCGAAATGTTGATCATTTGGTTTCTCCTAGTAATAAACAAACTCTTGTGA 1296 0.4136 MSLEGTESSEDGAGYLEPPDPDCVEIDPTCTYIKYKEVIGRGAFKTVYKAFDEVNGIEVAWSQVQIDEVLKSPGDLDRLYSELHLLRSLKHNNIVRFYNSWIDDRRKTVNMITELFTSGSLKQFRKRHKKVDLKAVKGWARQILMGLSYLHGHNPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLDRSNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPAALSKVKDPEMKSFIEKCLVPASQRLSAKELLMDPFLQMNASTKKGPFPLPHIVLPKLGASESRCMVSEGPSSARNGDISMDLGDTCELPPITIFDKSTDDASCSTSVEIRRQKRGDIFFLKGEENDKNSVSLVLRIADQGGRARNIHFIFYLDSDTAVSVSSEMLIIWFLLVINKLL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00880 431 MobiDBLite consensus disorder prediction 1 20 - -
Viun3g00880 431 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00880 431 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Viun3g00880 431 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Viun3g00880 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Viun3g00880 431 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00880 431 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00880 431 SUPERFAMILY Protein kinase-like (PK-like) 35 325 IPR011009 -
Viun3g00880 431 Gene3D Transferase(Phosphotransferase) domain 1 116 298 - -
Viun3g00880 431 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Viun3g00880 431 CDD STKc_WNK 32 290 - -
Viun3g00880 431 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00880 Viun-Chr3 5418512 5421460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00880 12 419 MAP Kinase Kinase Kinase AT5G41990 54.676 6.10e-152 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Viun3g00880 Pkinase 3.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00880 K08867 - gmx:121175054 657.136