Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00879 ATGATCACGGAGTTGTTTACCTCGGGTAGCCTCAAACAGTTTCGTAAAAGACACAAGAAGGTCGACTTGAAGGCCGTTAAAGGATGGGCAAGACAAATTTTAATGGGTCTAAGCTATCTCCACGGTCACAACCCACCAGTTATTCACAGGGACCTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTTGGGCTAGCAACTTTCTTGGATCGAAGTAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCACCCGAGCTGTATGATGAAAATTACAATGAATTAGCTGACATATATTCGTTTGGCATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCCGGTATAAAACCTGCTGCGCTTTCTAAAGTGAAAGATCCAGAAATGAAATCATTTATTGAGAAATGTCTAGTCCCAGCATCTCAAAGATTGTCAGCCAAGGAGCTTCTGATGGACCCATTTCTTCAAATGAATGCTTCAACAAAGAAGGGTCCTTTTCCATTGCCACATATTGTTCTTCCCAAATTGGGAGCCTCTGAAAGTCGTTGTATGGTGTCAGAAGGTCCTTCTAGTGCTCGTAATGGAGACATTTCAATGGATCTTGGTGACACCTGTGAGCTTCCACCGATCACTATATTTGATAAATCCACTGATGATGCATCATGTTCTACAAGTGTTGAGATAAGGAGGCAGAAGAGAGGTGATATTTTCTTTCTAAAAGGTGAAGAAAATGATAAGAACTCTGTATCATTGGTTCTGCGGATAGCTGACCAAGGAGGGCGAGCAAGAAATATCCATTTCATTTTCTACCTTGACAGTGACACTGCTGTCTCAGTTTCAAGCGAAATGGTAGAGCAACTTGAGCTTGCTGATCAGAATGTTAAATTCATAGCTGAGTTAATAGATTTGTTATTGATGAATTTGATTGCTGACTGGAAACCCTGTGTAGCAGTTGATCATTTGGTTTCTCCTAGTAATAAACAAACTCTTGTGAGCCAACAGGGAGAATTGAAGTTGGCAAAATGCACAGGCAGCTCAAAAGATTCGACTGAAGATTTAGGTCCCTCTACTTCATCTGCAACATTAGCTACAAAAGGAAACCTTGATAATATGGATATCGATGGGGCTTTATGTGACGAGTGCAGTGGTCTTCAGAAAGCTACCAAGGCAGATGATCTATGCTCTGAGAAGTCGCATGCATCTGCAACAATCGACTTCAATGATAATAAGTTTTCCACGGTTTCATATATGTCTGCTAAATCAGAATTTGGTAGAGGGAGTCAAACCTCATCTGCATCTGAAATTGGGGCATTGTCTGATTGTAAAAGCAAGTTTTTGGACATGGAAGGCTTCTCTAATAGTCTCAACATTGCTTCCTCCTCGTTTGAACCTGTGGGTGAGTTGAAATTAGAGTTACAAATGATTGAACAGAAGTATCAAGAGGCAATGAATGATTTATCCCAAAGAAGATACCAGGCCATCTTGGATATTAGAAGGAGAATGTCACAAAAGATGGTCTCATAG 1599 0.4046 MITELFTSGSLKQFRKRHKKVDLKAVKGWARQILMGLSYLHGHNPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLDRSNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPAALSKVKDPEMKSFIEKCLVPASQRLSAKELLMDPFLQMNASTKKGPFPLPHIVLPKLGASESRCMVSEGPSSARNGDISMDLGDTCELPPITIFDKSTDDASCSTSVEIRRQKRGDIFFLKGEENDKNSVSLVLRIADQGGRARNIHFIFYLDSDTAVSVSSEMVEQLELADQNVKFIAELIDLLLMNLIADWKPCVAVDHLVSPSNKQTLVSQQGELKLAKCTGSSKDSTEDLGPSTSSATLATKGNLDNMDIDGALCDECSGLQKATKADDLCSEKSHASATIDFNDNKFSTVSYMSAKSEFGRGSQTSSASEIGALSDCKSKFLDMEGFSNSLNIASSSFEPVGELKLELQMIEQKYQEAMNDLSQRRYQAILDIRRRMSQKMVS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00879 532 Coils Coil 490 510 - -
Viun3g00879 532 SUPERFAMILY Protein kinase-like (PK-like) 1 215 IPR011009 -
Viun3g00879 532 FunFam probable serine/threonine-protein kinase WNK9 6 185 - -
Viun3g00879 532 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00879 532 Gene3D Transferase(Phosphotransferase) domain 1 6 188 - -
Viun3g00879 532 SMART serkin_6 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00879 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Viun3g00879 532 Gene3D - 272 359 - -
Viun3g00879 532 MobiDBLite consensus disorder prediction 369 390 - -
Viun3g00879 532 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 399 - -
Viun3g00879 532 Pfam Protein kinase domain 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00879 Viun-Chr3 5417971 5420963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00879 23 354 MAP Kinase Kinase Kinase AT1G49160 68.072 1.32e-169 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Viun3g00879 Pkinase 1.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00879 K08867 - gmx:121175054 662.914