Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00877 ATGGCGCAGGGTATCTGGAGCCTCCTGATCCTGACTGTGTTGAAATTGATCCAACTTGCACCTACATCAAGTTACAAGGCATTTGATGAAGTCAATGGAATTGAGGTTGCATGGAGTCAGGTTCAGATTGATGAGGTGTTGAAATCCCCCGGTGACTTAGATAGGCTATATTCAGAATTACACCTCTTGAGATCACTGAAGCACAATAACATAGTAAGATTCTACAATTCCTGGATTGATGACAGGCGCAAGACCGTTAATATGATCACGGAGTTGTTTACCTCGGGTAGCCTCAAACAGTTTCGTAAAAGACACAAGAAGGTCGACTTGAAGGCCGTTAAAGGATGGGCAAGACAAATTTTAATGGGTCTAAGCTATCTCCACGGTCACAACCCACCAGTTATTCACAGGGACCTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTTGGGCTAGCAACTTTCTTGGATCGAAGTAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCACCCGAGCTGTATGATGAAAATTACAATGAATTAGCTGACATATATTCGTTTGGCATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCCGGTATAAAACCTGCTGCGCTTTCTAAAGTGAAAGATCCAGAAATGAAATCATTTATTGAGAAATGTCTAGTCCCAGCATCTCAAAGATTGTCAGCCAAGGAGCTTCTGATGGACCCATTTCTTCAAATGAATGCTTCAACAAAGAAGGGTCCTTTTCCATTGCCACATATTGTTCTTCCCAAATTGGGAGCCTCTGAAAGTCGTTGTATGGTGTCAGAAGGTCCTTCTAGTGCTCGTAATGGAGACATTTCAATGGATCTTGGTGACACCTGTGAGCTTCCACCGATCACTATATTTGATAAATCCACTGATGATGCATCATGTTCTACAAGTGTTGAGATAAGGAGGCAGAAGAGAGGTGATATTTTCTTTCTAAAAGGTGAAGAAAATGATAAGAACTCTGTATCATTGGTTCTGCGGATAGCTGACCAAGGAGGGCGAGCAAGAAATATCCATTTCATTTTCTACCTTGACAGTGACACTGCTGTCTCAGTTTCAAGCGAAATGGTAGAGCAACTTGAGCTTGCTGATCAGAATGTTAAATTCATAGCTGAGTTAATAGATTTGTTATTGATGAATTTGATTGCTGACTGGAAACCCTGTGTAGCAGTTGATCATTTGGTTTCTCCTAGTAATAAACAAACTCTTGTGAGCCAACAGGGAGAATTGAAGTTGGCAAAATGCACAGGCAGCTCAAAAGATTCGACTGAAGATTTAGGTCCCTCTACTTCATCTGCAACATTAGCTACAAAAGGAAACCTTGATAATATGGATATCGATGGGGCTTTATGTGACGAGTGCAGTGGTCTTCAGAAAGCTACCAAGGCAGATGATCTATGCTCTGAGAAGTCGCATGCATCTGCAACAATCGACTTCAATGATAATAAGTTTTCCACGGTTTCATATATGTCTGCTAAATCAGAATTTGGTAGAGGGAGTCAAACCTCATCTGCATCTGAAATTGGGGCATTGTCTGATTGTAAAAGCAAGTTTTTGGACATGGAAGGCTTCTCTAATAGTCTCAACATTGCTTCCTCCTCGTTTGAACCTGTGGGTGAGTTGAAATTAGAGTTACAAATGATTGAACAGAAGTATCAAGAGGCAATGAATGATTTATCCCAAAGAAGATACCAGGCCATCTTGGATATTAGAAGGAGAATGTCACAAAAGATGGTCTCATAG 1860 0.4081 MAQGIWSLLILTVLKLIQLAPTSSYKAFDEVNGIEVAWSQVQIDEVLKSPGDLDRLYSELHLLRSLKHNNIVRFYNSWIDDRRKTVNMITELFTSGSLKQFRKRHKKVDLKAVKGWARQILMGLSYLHGHNPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLDRSNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPAALSKVKDPEMKSFIEKCLVPASQRLSAKELLMDPFLQMNASTKKGPFPLPHIVLPKLGASESRCMVSEGPSSARNGDISMDLGDTCELPPITIFDKSTDDASCSTSVEIRRQKRGDIFFLKGEENDKNSVSLVLRIADQGGRARNIHFIFYLDSDTAVSVSSEMVEQLELADQNVKFIAELIDLLLMNLIADWKPCVAVDHLVSPSNKQTLVSQQGELKLAKCTGSSKDSTEDLGPSTSSATLATKGNLDNMDIDGALCDECSGLQKATKADDLCSEKSHASATIDFNDNKFSTVSYMSAKSEFGRGSQTSSASEIGALSDCKSKFLDMEGFSNSLNIASSSFEPVGELKLELQMIEQKYQEAMNDLSQRRYQAILDIRRRMSQKMVS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00877 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Viun3g00877 619 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Viun3g00877 619 Coils Coil 577 597 - -
Viun3g00877 619 Gene3D Phosphorylase Kinase; domain 1 16 91 - -
Viun3g00877 619 FunFam Probable serine/threonine-protein kinase WNK1 16 91 - -
Viun3g00877 619 Gene3D - 359 446 - -
Viun3g00877 619 Pfam Protein kinase domain 25 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00877 619 SUPERFAMILY Protein kinase-like (PK-like) 25 302 IPR011009 -
Viun3g00877 619 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 24 485 - -
Viun3g00877 619 CDD STKc_WNK 25 267 - -
Viun3g00877 619 FunFam probable serine/threonine-protein kinase WNK9 93 272 - -
Viun3g00877 619 MobiDBLite consensus disorder prediction 456 477 - -
Viun3g00877 619 SMART serkin_6 25 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00877 619 ProSiteProfiles Protein kinase domain profile. 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00877 Viun-Chr3 5417971 5421460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00877 110 441 MAP Kinase Kinase Kinase AT1G49160 68.072 8.63e-168 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Viun3g00877 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00877 K08867 - gmx:121175054 765.377