Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00872 ATGGTTAGAGACGATCTCTACATCACCGTTCCCAGCTTCTTCCGCTGCCCTATATCCCTCGACGTCATGAAATCCCCTGTCAGCCTCTCCACCGGCGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACGTGTCCCGCCACCATGCAGGTTCTTCAGACCAAGGAATTTGTTCCTAACCGAACCTTACAGAGGCTCATCCAGATCTGGTCAGACTCCCTCCACCACCCACTCCACCCGCCTCTCTCCCCCACCTCCACCCACTCCCAATCCCTCCCCTCCAAGGAACAAATCCTCCTCGCTATCTCCGACTTGCAGACTCGCCACGACAACCGCTTCGACTCGCTCGCCAAAATCGCGCGGTTCGCGCAGGATTCCGAGGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTCGTGCCGCTGCTGGTTGGCTTCCTCGACAATGTCAATGGCGGCGTCGAGTTCCTCGAACAGGTCGTTACGGCGTTGGATTTGGTTATCGGAAAAATGGAAGATCGCGAGGGGCTGAAAAACCTGATACTGAAGAGGCAGGGCGAGGCAGAAAAACAGAGTCTGGATTCTCTGCTCGTCGCTCTCCGACAAGGGAGCCATGCCACGCAGATAGCATCGGTTAGGGTTTTGACGTCGGTCGCCGTGGACGTGGAATCGAAGCTTATGATAGCGGAGAAGGAAGGTTTGGTGTCCGAATTGCTGAAGCTAATCACGCCGGAGAAAGATCCGGATCTAATCGAGAACTGTTTGTCGTGCCTGGTGGCGATTTCGTCTCCAAGACGGAGCAAGATGAAGCTGGTGCGTCTGGGAGCGGTTAAGGTGTTGTCGAAGCTTCTTTGCGGTTCGAACATGAGCGTGTCGATGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTTGGAGATAGGCGAGGATTCGGCGTGCGTGGCGGCGATAGTGAACAAGGTGCTGAAAGTATCCAGCGTGGCAACGGAACACGCCGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATGAGACGGCGCAAGAGGCCGTTACGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGGCGCAAGTGCGCCAAATGTCTGCGGATTTGCTCAAGATATTTCGGGTTAATTCTAAGTCGTGTCTTTCATCTTACGACACCAAAACCACTCATATTATGCCCTTCTGA 1257 0.5434 MVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHPPLSPTSTHSQSLPSKEQILLAISDLQTRHDNRFDSLAKIARFAQDSEENRDFLVRTECFVPLLVGFLDNVNGGVEFLEQVVTALDLVIGKMEDREGLKNLILKRQGEAEKQSLDSLLVALRQGSHATQIASVRVLTSVAVDVESKLMIAEKEGLVSELLKLITPEKDPDLIENCLSCLVAISSPRRSKMKLVRLGAVKVLSKLLCGSNMSVSMTEKVLKLVETVSSTKEGRLEIGEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDETAQEAVTKANGLTKILLLMQSNCSAQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00872 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 83 IPR013083 -
Viun3g00872 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Viun3g00872 418 SUPERFAMILY RING/U-box 5 78 - -
Viun3g00872 418 Gene3D - 93 407 IPR011989 -
Viun3g00872 418 SUPERFAMILY ARM repeat 118 400 IPR016024 -
Viun3g00872 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Viun3g00872 418 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Viun3g00872 418 CDD RING-Ubox_PUB 11 63 IPR045210 -
Viun3g00872 418 PANTHER WDSAM1 PROTEIN 9 406 IPR045185 GO:0061630
Viun3g00872 418 FunFam RING-type E3 ubiquitin transferase 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00872 Viun-Chr3 5386221 5387655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00872 1 418 U-box Gene Family AT5G64660 51.972 1.59e-140 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00872 - - vra:106764800 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00872 3 5386221 5387655 Viun3g00872 3 5386221 5387655 ECH
Viun9g01823 9 27807415 27809247 Viun3g00872 3 5386221 5387655 ECH
Viun3g00872 3 5386221 5387655 Viun9g01823 9 27807415 27809247 PCT