Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00871 ATGCTGGGCTCTGATGATGGAGATATTGATGTGTTCTTTGACTCGCTGGAGAGTTTGTCAGCTCAAGATTCTGTTCTAGGCAAAGAAGAGTTTGGCTCTGAAGGGTGTGGTTGTGATTATGGTGACATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGATTTGGGTTTAGACGAAGCTTCTTCAACCATGGTTTGTTATCAAGACAGAATGAACTTTGACGACTCATCTATCAGTTTGGGATTTGAGAGGATCAGGGAGTGCAGTGGAGCAATCTCAAATGCTTCAATTTTGCATAACGATCAGGTATCCGAGAAGTCGGTTCTCTCTGGAGGCAAAGCAGCTTCTGAAGCAAAAGTCTCATTGGATGAAGTGAAAGGGTGTCCCCAAGGTGAGGAAGATGCAAACTTTGAAGGAAAAGAGCATGACTTCCCTTCTACAAATCAGGAACACAGAGAAGCTGATTCGCAAGAATTTCAGGATTTTGATATGGGTAAAAGGAAAAGGAAAAACTGGTGGAAACGTTTTGTGAACGAGAGGAAAGGGGGTGAAGGAAATGTTAGATCAAAATTTAATGCAGGGGCAAACAAAACTCGAAGAATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTAGAGTTCAGTGGCTTATTCATTGGACAAGAGGTTAGAGCACACAAAGGTGTGATCTGGACCATGAAATTTAGTCCCTGTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTCGAATATGGCGTGTTACAACACTGGATAAATCCAGTATTTGTTTCACCTCAAAAGACAGCACTTCTAATACCAAAGTGGAACGTAAAAACACTTCTCCTAAGAAGAAAAACTCATACCGACCCTTCATTTTCCTTCCAAATAGTATTTTTCAAATTGAGGAATCACCACTGCAAGAATTTTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGATAAAACTGTTCGCTTGTGGCAAATTGATTGTAATCAATGTCTAAGAGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTAATTGACTGGGCAAATATACGAGATGTCATAAGTGCTATAAGTTACCAGGAAGATGGGAAAGGATTTGTAGTAGGTTCTGTTACAGGGACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCCCAGATAGATTTACATGGAAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAGTACCCAGAGAATTATGATCACAACAGAAGATTCCAAAATTCATATTTATGATGGTATTGAGCTTGTTCAGAAATACAAAGGTCTTCCCAAGTCAGGGAGTCAAATGTCGGGTTCATTTACATCGAGTGGGAAACATATAATTTCAGTTGGAGAAGACTCCCATGTTTACATATGGGACTTGGACGAATTGGGAAATGCTTCTTCTAAAAACACAAAATCTGAACGCTCCTGTGAGTACTTTTTTTCAAAGGGTGTTACTGTTGCAATACCTTGGTCAGATGTGAAAGCATATGAAAGGGGTTCTAGCAGTAACTTTTCCCACCATTCTTCAGAGATTGCCCCACCTGAGATCAGAGATCAAGAGCGTTTTTCTCTTGGTAATTGGTTTGCCATTGATGGCACGTGCCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCCAGCTGGGATTTACCTATAGCAGAAGATGAATATGACGAGCAACAGTTATGTCAGAAAAATACTTGCCATGACAGAATTGTATCAGAAACATGGGGCCTATCAATTGTGGTCGCTGCTTCTGATGGAACTATCAAGACATTCCACAACTTTGGATTACCCATTAGGCTCTAA 2007 0.4086 MLGSDDGDIDVFFDSLESLSAQDSVLGKEEFGSEGCGCDYGDIWVKEPVSVKERRERFLQDLGLDEASSTMVCYQDRMNFDDSSISLGFERIRECSGAISNASILHNDQVSEKSVLSGGKAASEAKVSLDEVKGCPQGEEDANFEGKEHDFPSTNQEHREADSQEFQDFDMGKRKRKNWWKRFVNERKGGEGNVRSKFNAGANKTRRIKVRQNKKRWLEFSGLFIGQEVRAHKGVIWTMKFSPCGQYLASGGEDGVVRIWRVTTLDKSSICFTSKDSTSNTKVERKNTSPKKKNSYRPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIDCNQCLRVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWANIRDVISAISYQEDGKGFVVGSVTGTCRFYVASGKYFQLEAQIDLHGKKKASGNKITGIQFSQKSTQRIMITTEDSKIHIYDGIELVQKYKGLPKSGSQMSGSFTSSGKHIISVGEDSHVYIWDLDELGNASSKNTKSERSCEYFFSKGVTVAIPWSDVKAYERGSSSNFSHHSSEIAPPEIRDQERFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPIAEDEYDEQQLCQKNTCHDRIVSETWGLSIVVAASDGTIKTFHNFGLPIRL 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00871 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Viun3g00871 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 399 IPR001680 GO:0005515
Viun3g00871 668 Gene3D - 223 553 IPR015943 GO:0005515
Viun3g00871 668 MobiDBLite consensus disorder prediction 139 168 - -
Viun3g00871 668 Pfam WD domain, G-beta repeat 228 260 IPR001680 GO:0005515
Viun3g00871 668 Pfam WD domain, G-beta repeat 353 389 IPR001680 GO:0005515
Viun3g00871 668 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Viun3g00871 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 533 IPR001680 GO:0005515
Viun3g00871 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 264 - -
Viun3g00871 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 350 - -
Viun3g00871 668 SMART WD40_4 310 348 IPR001680 GO:0005515
Viun3g00871 668 SMART WD40_4 442 482 IPR001680 GO:0005515
Viun3g00871 668 SMART WD40_4 351 390 IPR001680 GO:0005515
Viun3g00871 668 SMART WD40_4 483 524 IPR001680 GO:0005515
Viun3g00871 668 SMART WD40_4 222 261 IPR001680 GO:0005515
Viun3g00871 668 SMART WD40_4 392 431 IPR001680 GO:0005515
Viun3g00871 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 392 - -
Viun3g00871 668 FunFam WD repeat-containing protein 44 213 556 - -
Viun3g00871 668 SUPERFAMILY WD40 repeat-like 227 658 IPR036322 GO:0005515
Viun3g00871 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 357 IPR001680 GO:0005515
Viun3g00871 668 PANTHER WD REPEAT DOMAIN 44 8 665 IPR040324 -
Viun3g00871 668 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Viun3g00871 668 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Viun3g00871 668 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00871 Viun-Chr3 5363382 5368999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00871 314 566 U-box Gene Family AT2G33340 25.969 2.55e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00871 K20241 - gmx:100819135 1108.2