Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00870 ATGCTGGGCTCTGATGATGGAGATATTGATGTGTTCTTTGACTCGCTGGAGAGTTTGTCAGCTCAAGATTCTGTTCTAGGCAAAGAAGAGTTTGGCTCTGAAGGGTGTGGTTGTGATTATGGTGACATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGATTTGGGTTTAGACGAAGCTTCTTCAACCATGGTTTGTTATCAAGACAGAATGAACTTTGACGACTCATCTATCAGTTTGGGATTTGAGAGGATCAGGGAGTGCAGTGGAGCAATCTCAAATGCTTCAATTTTGCATAACGATCAGGTATCCGAGAAGTCGGTTCTCTCTGGAGGCAAAGCAGCTTCTGAAGCAAAAGTCTCATTGGATGAAGTGAAAGGGTGTCCCCAAGGTGAGGAAGATGCAAACTTTGAAGGAAAAGAGCATGACTTCCCTTCTACAAATCAGGAACACAGAGAAGCTGATTCGCAAGAATTTCAGGATTTTGATATGGGTAAAAGGAAAAGGAAAAACTGGTGGAAACGTTTTGTGAACGAGAGGAAAGGGGGTGAAGGAAATGTTAGATCAAAATTTAATGCAGGGGCAAACAAAACTCGAAGAATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTAGAGTTCAGTGGCTTATTCATTGGACAAGAGGTTAGAGCACACAAAGGTGTGATCTGGACCATGAAATTTAGTCCCTGTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTCGAATATGGCGTGTTACAACACTGGATAAATCCAGTATTTGTTTCACCTCAAAAGACAGCACTTCTAATACCAAAGTGGAACGTAAAAACACTTCTCCTAAGAAGAAAAACTCATACCGACCCTTCATTTTCCTTCCAAATAGTATTTTTCAAATTGAGGAATCACCACTGCAAGAATTTTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGATAAAACTGTTCGCTTGTGGCAAATTGATTGTAATCAATGTCTAAGAGTTTTCCATCACAATGACTATGCAGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTAATTGACTGGGCAAATATACGAGATGTCATAAGTGCTATAAGTTACCAGGAAGATGGGAAAGGATTTGTAGTAGGTTCTGTTACAGGGACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCCCAGATAGATTTACATGGAAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAGTACCCAGAGAATTATGATCACAACAGAAGATTCCAAAATTCATATTTATGATGGTATTGAGCTTGTTCAGAAATACAAAGGTCTTCCCAAGTCAGGGAGTCAAATGTCGGGTTCATTTACATCGAGTGGGAAACATATAATTTCAGTTGGAGAAGACTCCCATGTTTACATATGGGACTTGGACGAATTGGGAAATGCTTCTTCTAAAAACACAAAATCTGAACGCTCCTGTGAGTACTTTTTTTCAAAGGGTGTTACTGTTGCAATACCTTGGTCAGATGTGAAAGCATATGAAAGGGGTTCTAGCAGTAACTTTTCCCACCATTCTTCAGAGATTGCCCCACCTGAGATCAGAGATCAAGAGCGTTTTTCTCTTGGTAATTGGTTTGCCATTGATGGCACGTGCCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCCAGCTGGGATTTACCTATAGCAGAAGATGAATATGACGAGCAACAGTTATGTCAGAAAAATACTTGCCATGACAGAATTGTATCAGAAACATGGGGCCTATCAATTGTGGTCGCTGCTTCTGATGGAACTATCAAGACATTCCACAACTTTGGATTACCCATTAGGCTCTAA 2010 0.409 MLGSDDGDIDVFFDSLESLSAQDSVLGKEEFGSEGCGCDYGDIWVKEPVSVKERRERFLQDLGLDEASSTMVCYQDRMNFDDSSISLGFERIRECSGAISNASILHNDQVSEKSVLSGGKAASEAKVSLDEVKGCPQGEEDANFEGKEHDFPSTNQEHREADSQEFQDFDMGKRKRKNWWKRFVNERKGGEGNVRSKFNAGANKTRRIKVRQNKKRWLEFSGLFIGQEVRAHKGVIWTMKFSPCGQYLASGGEDGVVRIWRVTTLDKSSICFTSKDSTSNTKVERKNTSPKKKNSYRPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIDCNQCLRVFHHNDYAVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWANIRDVISAISYQEDGKGFVVGSVTGTCRFYVASGKYFQLEAQIDLHGKKKASGNKITGIQFSQKSTQRIMITTEDSKIHIYDGIELVQKYKGLPKSGSQMSGSFTSSGKHIISVGEDSHVYIWDLDELGNASSKNTKSERSCEYFFSKGVTVAIPWSDVKAYERGSSSNFSHHSSEIAPPEIRDQERFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPIAEDEYDEQQLCQKNTCHDRIVSETWGLSIVVAASDGTIKTFHNFGLPIRL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00870 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Viun3g00870 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 393 - -
Viun3g00870 669 PANTHER WD REPEAT DOMAIN 44 8 666 IPR040324 -
Viun3g00870 669 SMART WD40_4 443 483 IPR001680 GO:0005515
Viun3g00870 669 SMART WD40_4 310 348 IPR001680 GO:0005515
Viun3g00870 669 SMART WD40_4 484 525 IPR001680 GO:0005515
Viun3g00870 669 SMART WD40_4 351 391 IPR001680 GO:0005515
Viun3g00870 669 SMART WD40_4 222 261 IPR001680 GO:0005515
Viun3g00870 669 SMART WD40_4 393 432 IPR001680 GO:0005515
Viun3g00870 669 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Viun3g00870 669 PRINTS G protein beta WD-40 repeat signature 378 392 IPR020472 -
Viun3g00870 669 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Viun3g00870 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 534 IPR001680 GO:0005515
Viun3g00870 669 Pfam WD domain, G-beta repeat 228 260 IPR001680 GO:0005515
Viun3g00870 669 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Viun3g00870 669 Pfam WD domain, G-beta repeat 353 390 IPR001680 GO:0005515
Viun3g00870 669 MobiDBLite consensus disorder prediction 139 168 - -
Viun3g00870 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 264 - -
Viun3g00870 669 SUPERFAMILY WD40 repeat-like 227 659 IPR036322 GO:0005515
Viun3g00870 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 350 - -
Viun3g00870 669 Gene3D - 223 554 IPR015943 GO:0005515
Viun3g00870 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 400 IPR001680 GO:0005515
Viun3g00870 669 FunFam WD repeat-containing protein 44 213 557 - -
Viun3g00870 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 357 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00870 Viun-Chr3 5363382 5369000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00870 314 567 U-box Gene Family AT2G33340 25.869 3.64e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00870 K20241 - gmx:100819135 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00870 3 5363382 5369000 Viun3g00870 3 5363382 5369000 ECH
Viun3g00870 3 5363382 5369000 Viun9g02132 9 31054552 31059157 PCT