Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00864 ATGGATTATCTCTTCCTCTTTTCTCTCTTCCTCCTCCTAACCCTCTCCGCCGCGCACCGTAAAACCCCGCCTGTCACCGCCGTCAAATCTGTCACGCCGGAGATCCAACAAGCCTGCGCCGCCACGCGCTTCCCGCAGCAATGCGAAACCTCTCTCTCCCAATACCCCAAACTCCCGCCCAACCCGACCTCTCTCCAGCTAATCCAGTCCGCCATCGCCATCTACTCTGAAAACCTCGCCACCGCTCAGTCCATGGTGAATTCCCTCCTCGACGGCGCTTCCGGCAGCCGCAACCTCACCGTGGCCGCCTCCACCTGCGTTGAAGTGTTGGACAACTCGAAGCACCGCACTTCCCTCGCCAGCGACGCGCTGCCACTCGGCAAAACCAAGGACGCGCGCGCGTGGCTGGGCGCGGCGCTCGCTTACCAGTACGACTGCTGGAACAGCCTCAAATATGCGAACGTGTCCGCGGCCGTCGGCAAAGCGATGGCGTTCATCGACTCCCTCGAATCTCTCTCCAGCAACGCCCTCAGCATGGCCTTCTCCCTGGACGCCTTCGGAAACGACGCCGCTTCGTGGAAGCCTCCCGCCACCGAGCGCAACGGCTTCTGGGGCAGCCTCGCCTCCGGCGACTCCGGAACCGTGGGAGGTGTTCCGCCCAATTTGAAACCCGACGTTACTGTCTGTAAAGACGGAGCTGACGGCTGTTATAAGACCATACAAGAGGCCGTTAACGCTGCGCCAGATAACGGCGACGGGAAGAAGCGGTTTGTCATACTCATAAAAGAAGGAGTTTACAAGGAGACCGTTAGGGTTCCGTTGGCGAAGAGGAATGTGGTGTTCTTGGGTGACGGCATTGGAAAAACGGTTATAACCGGTGACGCTAACGTGGGGCAACCAACCATGACAACTTACAACTCTGCCACCGTCGCGGTTCTTGGGGATGGATTCATGGCAAAGGATCTGACGATCGAGAACACAGCTGGTCCTGACGCACACCAGGCAGTGGCATTCAGATCAGACAGTGATCTTTCTGTGATTGAGAATTGCGAATTCTTGGGCAACCAAGACACTCTCTATGCTCACTCCCTGCGCCAATTCTACAAATCATGCCGCATTGAGGGCAACGTGGATTTCATCTTTGGAAACGCTGCCGCAGTTTTCCAAGACTGTCTCGTCCTGGTTCGTCCCAGGCAAGTGCGTCCAGAGAAGGGCGAGAACAATGCTCTCACTGCACATGGCAGAACGGACCCAGCACAACCCACAGGCTTTGTTTTCCAGAACTGTGTCATCAATGGCACTGAGGAGTACATGGCTTTGTATCACCGCAACCCAAAGGTGCACAAGAACTACTTGGGTAGGCCTTGGAAGGAGTATTCGAGAACGGTTTTCGTTAATTCAGAGTTGGAGGTGATTGTGACACCCCAGGGTTGGATGCCATGGACCGGTGACTTTGCCCTCAAGACACTTTACTATGGGGAGTTCGGGAACAAGGGTCCTGGTTCTGATTTGTCTCAGAGGGTATCCTGGAGTAGTAAGATCCCTGAAGACCACGTCGTGGCCTACTCGGTACAGAACTTCATTCAAGGAAATGATTGGATTCCATCATCATCCTCGTAG 1620 0.5556 MDYLFLFSLFLLLTLSAAHRKTPPVTAVKSVTPEIQQACAATRFPQQCETSLSQYPKLPPNPTSLQLIQSAIAIYSENLATAQSMVNSLLDGASGSRNLTVAASTCVEVLDNSKHRTSLASDALPLGKTKDARAWLGAALAYQYDCWNSLKYANVSAAVGKAMAFIDSLESLSSNALSMAFSLDAFGNDAASWKPPATERNGFWGSLASGDSGTVGGVPPNLKPDVTVCKDGADGCYKTIQEAVNAAPDNGDGKKRFVILIKEGVYKETVRVPLAKRNVVFLGDGIGKTVITGDANVGQPTMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNAAAVFQDCLVLVRPRQVRPEKGENNALTAHGRTDPAQPTGFVFQNCVINGTEEYMALYHRNPKVHKNYLGRPWKEYSRTVFVNSELEVIVTPQGWMPWTGDFALKTLYYGEFGNKGPGSDLSQRVSWSSKIPEDHVVAYSVQNFIQGNDWIPSSSS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00864 539 FunFam Probable pectinesterase/pectinesterase inhibitor 51 33 182 - -
Viun3g00864 539 SMART PMEI_2 30 179 IPR006501 GO:0004857
Viun3g00864 539 PANTHER PECTINESTERASE 15 535 - -
Viun3g00864 539 NCBIfam pectinesterase inhibitor domain 5 178 IPR006501 GO:0004857
Viun3g00864 539 Gene3D - 220 539 IPR012334 -
Viun3g00864 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 179 IPR035513 -
Viun3g00864 539 SUPERFAMILY Pectin lyase-like 223 536 IPR011050 -
Viun3g00864 539 FunFam Pectinesterase 220 539 - -
Viun3g00864 539 Pfam Pectinesterase 225 531 IPR000070 GO:0030599|GO:0042545
Viun3g00864 539 CDD PMEI-like_3 38 179 - -
Viun3g00864 539 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Viun3g00864 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 183 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00864 Viun-Chr3 5330624 5332917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00864 22 533 Carbohydrate Esterase AT5G09760 62.863 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00864 - - gmx:100819675 885.945