Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00863 ATGAGCGAAAGCGGCAGAAACACCTCTTCAAAGTTGGATTCAGGAGATGCACCTCAATTTGCATCTTATGGTACTACTAGTAGCAACAATTCAAAGTCTTCCCATTTGGAAAGAGACGATAAGTTAGATCCAAGAATGGGATTTTCAAAGGAGGAATCTTTTTCAGGAGGCAGGGGTTCAAATAAGGATGATATTGTGAGCAAAGATTACAGAGTTTCAGATGCGCAAAACACTGATGGAAGTAACAAAATGGAATTGTCTCCTGTAAAGGAAGATTTAGAAAATAAGGACAATGAATCCCCAGAAACTGGTTGCAGTAGGTTAGTCAGAAGTAGGAGCCGAAGCAGGAGCAGGAGCCCTCGTCGTAGGTCTAGGTGGGATTCAATAACCAATGATAGATATGAAATGAGGGCAGCATGTAGAAATTTTGCTGATGGGAAATGCAGAAGAGGAAGTCAATGTCTCTTCCGTCACAGTGACAATCAAAAATCTGAAGACAGCAGGGTAAGTTCACGCAGGCAAGATGGAAGGTGTAGAATGGGAGCATCATGCAATGAAAATTCTAGCAAGTTCAATGAAGCTTCTATGGATGAATCAAGCAGGGAAATGGAAATTGATAGAAGGTGCACAGGGAGCTCTTTGAAGCAAAGTCATGGTAGAAACCGGACAAGTGAAATTCCTTGCAAATTTTATGCATTTGGGAATTGTCGATATGGTAAACATTGTAGATTTTTACATGATAGTAAAGCATTATGGAGCCCAAGTAGAGACTTCAAGGATGATTTGTTAAGGAGCAGTGGTGGAGATCAGGCTTTGGATGGTCCAAAATCGAGTGATGAAGTTAGTCTCCATGGAAAAATAATTGATGATACACGGGGTTTAGATGGTAGTGCCGCTGGTGCAGAGAACAAAACAGGAATCATGGTTGACCCAGAACCTGGATTTAATACTTTGCCCGTTGGTGATGAACGGGACCATAGCTTAGACAAGAACACAGTGCATGGTGAATCATCATTTTCAAGTGATGTGAAGGAGACCAAAAATGATAGTTCCAACGTTCCCACCATTTTGCCTGGTAATGAAAAAATGTCTCATAATTGGAATTGTGGTGTGAGATCTCCCATCCCTATTAAAGAAGAGCAAGAGCAGAGTAAGCAACAAGTTGCTCCAGGTAATCACGTGCTTGATGTTTCACTAGTTATGCCTCCTTGTCTATAG 1218 0.4138 MSESGRNTSSKLDSGDAPQFASYGTTSSNNSKSSHLERDDKLDPRMGFSKEESFSGGRGSNKDDIVSKDYRVSDAQNTDGSNKMELSPVKEDLENKDNESPETGCSRLVRSRSRSRSRSPRRRSRWDSITNDRYEMRAACRNFADGKCRRGSQCLFRHSDNQKSEDSRVSSRRQDGRCRMGASCNENSSKFNEASMDESSREMEIDRRCTGSSLKQSHGRNRTSEIPCKFYAFGNCRYGKHCRFLHDSKALWSPSRDFKDDLLRSSGGDQALDGPKSSDEVSLHGKIIDDTRGLDGSAAGAENKTGIMVDPEPGFNTLPVGDERDHSLDKNTVHGESSFSSDVKETKNDSSNVPTILPGNEKMSHNWNCGVRSPIPIKEEQEQSKQQVAPGNHVLDVSLVMPPCL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00863 405 SMART c3hfinal6 222 248 IPR000571 GO:0046872
Viun3g00863 405 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Viun3g00863 405 ProSiteProfiles Zinc finger C3H1-type profile. 222 249 IPR000571 GO:0046872
Viun3g00863 405 SUPERFAMILY CCCH zinc finger 224 247 IPR036855 GO:0046872
Viun3g00863 405 MobiDBLite consensus disorder prediction 159 183 - -
Viun3g00863 405 MobiDBLite consensus disorder prediction 1 32 - -
Viun3g00863 405 MobiDBLite consensus disorder prediction 85 103 - -
Viun3g00863 405 MobiDBLite consensus disorder prediction 333 362 - -
Viun3g00863 405 MobiDBLite consensus disorder prediction 33 48 - -
Viun3g00863 405 ProSiteProfiles Zinc finger C3H1-type profile. 134 161 IPR000571 GO:0046872
Viun3g00863 405 MobiDBLite consensus disorder prediction 263 367 - -
Viun3g00863 405 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 386 - -
Viun3g00863 405 Pfam RNA-binding, Nab2-type zinc finger 139 158 - -
Viun3g00863 405 MobiDBLite consensus disorder prediction 1 124 - -
Viun3g00863 405 MobiDBLite consensus disorder prediction 56 70 - -
Viun3g00863 405 MobiDBLite consensus disorder prediction 159 175 - -
Viun3g00863 405 Gene3D - 127 192 - -
Viun3g00863 405 Gene3D - 210 265 - -
Viun3g00863 405 Pfam CCCH-type zinc finger 227 247 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00863 Viun-Chr3 5320747 5322989 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g00863 zf-CCCH_4 8.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00863 - K22909 var:108339337 551.977