Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00853 ATGGCTGTATCGAAATTGATACCGGGGTTTCGATTCCACCCCTCTGGTGTCGAGTTAGTCGTGTACTTTCTGAAAAGGAAAGTGATGGGAAAAAAGTTCTTTGGTGGTGCCATTGCTGAACTTGACATATACAAATATGCTCCATGGGATCTGCCAGCTAAGTCTTGTCTAAGAACTGGGGAATTGGAATGGTACTTCTTCTGCCCGCTGGAGAAGAAATATGGGAGTGGGAGTAGGATGAAGCGCGCTACTGAAATTGGGTACTGGAAAGCTACTGGGAGGGATAGAGTTGTTCAGCACAATCATAAAACGGTGGGGATGATTAGAACACTGATATTTCACAAGGGTAAATCGCCGAAAGGTGAAAGAACCAATTGGGTTATGCATGAGCATAGGCTTGAAGATAAGGACCTTGCTGACAAAGGAATTGCACAGCATTCCTATGTAGTCTGCAAGGTATTTGAAAAGGAAGGTCTTGGTCCCAGGAATGGTGCGCAATATGCAAGACCATTTAATGAGGAAGAGTGGAACGATGAAGAACTGGACATACCTTGTACTGCTTCAACAGCACCAGTTCCCATCTTGCCTATGACATCCGATGCCTCTGTCCCAACGGACAATCCCGTCCCTGCTAGTGGATATACATCATGTCTATCAACATCAATGCCTGTACCTGGCACAGCGGATCCTTCTGATCCAAATGATCAAGTTGTTAACAATGATGATGAAGATATTTTACGGATGAACGATATTTCTGAAGATGGTGACAAATTGTCTGAGAAGGCTGATAATGATCCAAAAAAGATTGCTGGGGATGTACCACCTTTACCCGAATTTTTCGAGGGCTTGGATGCCTACTGGGATGCTTATCATGCTGGTATTTCCTCTGGCCAGAATGCTGAATTTAGCACAAACGGAATGGTTACCACAGATGATGTCTGGAGCTCGGACTTCCTACAGTTATCTGATCTAGACATCCCATTGGTCTGGCCGAATACACAACCTTAA 1008 0.4454 MAVSKLIPGFRFHPSGVELVVYFLKRKVMGKKFFGGAIAELDIYKYAPWDLPAKSCLRTGELEWYFFCPLEKKYGSGSRMKRATEIGYWKATGRDRVVQHNHKTVGMIRTLIFHKGKSPKGERTNWVMHEHRLEDKDLADKGIAQHSYVVCKVFEKEGLGPRNGAQYARPFNEEEWNDEELDIPCTASTAPVPILPMTSDASVPTDNPVPASGYTSCLSTSMPVPGTADPSDPNDQVVNNDDEDILRMNDISEDGDKLSEKADNDPKKIAGDVPPLPEFFEGLDAYWDAYHAGISSGQNAEFSTNGMVTTDDVWSSDFLQLSDLDIPLVWPNTQP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00853 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 219 - -
Viun3g00853 335 MobiDBLite consensus disorder prediction 199 235 - -
Viun3g00853 335 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Viun3g00853 335 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Viun3g00853 335 MobiDBLite consensus disorder prediction 240 268 - -
Viun3g00853 335 MobiDBLite consensus disorder prediction 199 273 - -
Viun3g00853 335 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Viun3g00853 335 Gene3D NAC domain 16 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00853 Viun-Chr3 5228252 5231490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00853 1 263 NAC Transcription Factor Family AT5G64060 50.000 1.33e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g00853 NAM 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00853 - - vra:106770001 617.076