Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00849 ATGGCGGGGAAACTGGCAAAGGCAGCTTATGATGCAAAGATGTTGAAGCTTCTAAGAGAGTACAGTCAGGTGTTGGTGGTTTCATCTGACAATGTAGGTTCAAACCAGCTTCAGGGCATACGGAGGGGACTCCATGCTGATTCAGTTGTGGTGATGGGAAATAACTCCCTCATGAAACGCTCTATCATCTTGGATGCCCAGAAGACTGGCAACAAGGCCTTCCTTAACCTTGTCCCCCTTCTTGTGGGAAATGTGGCATTAATTTTCACCAAAGGTGACATAAGGGAGGTCAGCGAACAGATTGCCAAGTACAAGGTTGTTCAACCTATTCTAATGTGCCCCAAGTATATGTCACATGACACATACCACAATTGTTCCTATATGCAATCTGGACAGTTACCTTTGGGCCTCACATGTTGTAATCAGCAGCAGTCTTCGCAGGTTTCTGAGCCTTTTCTTGTATGCTCAAAATTTCAGCCACACCAACATTGTTTCATGATGAGATCAAGGCAGTTCTTGATGACAAGTATATGGTCTCCTCTTCTCCTTTTGGCTGGCAACTTGTGA 567 0.4497 MAGKLAKAAYDAKMLKLLREYSQVLVVSSDNVGSNQLQGIRRGLHADSVVVMGNNSLMKRSIILDAQKTGNKAFLNLVPLLVGNVALIFTKGDIREVSEQIAKYKVVQPILMCPKYMSHDTYHNCSYMQSGQLPLGLTCCNQQQSSQVSEPFLVCSKFQPHQHCFMMRSRQFLMTSIWSPLLLLAGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00849 188 Gene3D - 4 135 IPR043141 -
Viun3g00849 188 SUPERFAMILY Ribosomal protein L10-like 7 105 IPR043141 -
Viun3g00849 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 6 139 - -
Viun3g00849 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
Viun3g00849 188 FunFam 60S acidic ribosomal protein P0 4 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00849 Viun-Chr3 5200217 5202508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00849 7 109 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 66.019 1.23e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00849 K02941 - mnt:21409050 155.992