Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00848 ATGCCGGCGTGGTGGAGTAGGAAGTGGAGCAAGAGCAAGGAGGAGCACGAGGAGGCCGAGGAGGAGGAAGAGGAAGAGCCACGTGGCGGCTTTCAGTTGAGTTTCTTGAAATCTCCGGTGGCCGTTAGGAGGGGTGACGTCAGCAAGAGTAAGAGGGACAAGAAGAAGCCGAAGAGCTTCGACGACAAGCTGAAAGGGGTTCCGTTGCCTCGTCCCACGCACAGTCACAGCGATCAAATTCAAACGTTTGGATCTCTCTCGATGTCGGGTTCCAGCGTCAGCTCCTCCACCTCCTTCGACGATCACCCAATTTCGCCTCACGTTAATGCCAACAGAGGACAAGATGAGGTGAGGTTCAATGTGAGGTCAAAAAGTCCTGGTCCTGGGTCAAGAGGACCTACTAGTCCTACCTCACCGCTTCATCCAAGGTTGCATGCTTTGAGTCTTGACTCTCCTACGGGGAGGCAAGACGAGGGAAGGAGTGAATGTCATCCGTTGCCTCTTCCTCCTGGTTCTCCAACTAGTCCTTCTTCTGTGCTTTCCAATTCCATCACACGGCCAAATGGACTGTTGGAAAATGCCACCAGCAATGTGTCCAAGTGGAGAAAAGGAAAGCTTCTTGGACGAGGAACATTTGGGCATGTGTATCTGGGATTCAATAGTGAAAATGGACAGATGTGTGCAATAAAAGAAGTCAAGGTTGTATCTGATGATCAAACATCAAGAGAGTGCCTCAAACAACTTAATCAGGAGATAAATTTGCTAAATCAGCTTTCACACCCTAATATTGTTCAATACTATGGGAGTGAACTGGTAGAAGAATCACTTTCCGTATATTTGGAATTTGTCTCTGGTGGTTCCATCCAGAAATTACTTCAGGAGTATGGTCCATTTACGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGCAAGAAATACCGTACACAGGGATATTAAAGGGGCAAACATACTAGTTGATCCTAATGGTGAAATTAAATTGGCCGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCGATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTGATGAATACAAATGGCTATAGTCTTCCGGTTGATATATGGAGCTTGGGATGCACAATTATTGAAATGGCAACATCTAAACCTCCATGGAATCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCTGAGCATCTCTCCAATGATGCAAAGAATTTCATCAAGTTATGCTTACAAAGAGACCCATCGGCTCGCCCGACGGCCCAAATGTTACTAGACCAGCACCCCTTCATTCAAGATCAATCAGCAACAAAAGCTGCAAATGTCAGCATAACCAGAGAAGCTTTCCCTTACATGCTTGATGGAAGTCGGACACCGCCTGTGTTAGAGTCCCATTCGAACCGAACAAGTATAACTTCGCTTGATGGGGATTATGCATCAAAGCCAGCTCTTGCAGCCCCACGTGCATTAAGAAGTCCAAGAGATAACACAAGAACGATCATATCTTTACCGGTATCTCCCTCTTCAAGTCCATTGCGACGGTATGGGCCAACGCACCAGAGCTGTTACTTTTCTCCTCCTCATCCAGCTTACACAGTAATGGGACAAAGTAGTTACACTTTGAATGACGCATGCTCGTATCCCATAAGGTCAAATGCCACGTTGACTCTTGATCCTTGGAATGAAACATCTCGGTTCAAAGCCAATACACCACCTGGTGGATCTCCAAGAATGAGACTCATTTGA 1827 0.4609 MPAWWSRKWSKSKEEHEEAEEEEEEEPRGGFQLSFLKSPVAVRRGDVSKSKRDKKKPKSFDDKLKGVPLPRPTHSHSDQIQTFGSLSMSGSSVSSSTSFDDHPISPHVNANRGQDEVRFNVRSKSPGPGSRGPTSPTSPLHPRLHALSLDSPTGRQDEGRSECHPLPLPPGSPTSPSSVLSNSITRPNGLLENATSNVSKWRKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVVSDDQTSRECLKQLNQEINLLNQLSHPNIVQYYGSELVEESLSVYLEFVSGGSIQKLLQEYGPFTEPVIQNYTRQIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTIIEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPSARPTAQMLLDQHPFIQDQSATKAANVSITREAFPYMLDGSRTPPVLESHSNRTSITSLDGDYASKPALAAPRALRSPRDNTRTIISLPVSPSSSPLRRYGPTHQSCYFSPPHPAYTVMGQSSYTLNDACSYPIRSNATLTLDPWNETSRFKANTPPGGSPRMRLI 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00848 608 Pfam Protein kinase domain 202 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00848 608 SMART serkin_6 201 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00848 608 MobiDBLite consensus disorder prediction 74 104 - -
Viun3g00848 608 Coils Coil 6 26 - -
Viun3g00848 608 Gene3D Transferase(Phosphotransferase) domain 1 198 479 - -
Viun3g00848 608 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 44 467 - -
Viun3g00848 608 SUPERFAMILY Protein kinase-like (PK-like) 199 535 IPR011009 -
Viun3g00848 608 CDD STKc_MEKK1_plant 200 458 - -
Viun3g00848 608 ProSitePatterns Protein kinases ATP-binding region signature. 207 230 IPR017441 GO:0005524
Viun3g00848 608 ProSiteProfiles Protein kinase domain profile. 201 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00848 608 MobiDBLite consensus disorder prediction 44 69 - -
Viun3g00848 608 FunFam Mitogen-activated protein kinase kinase kinase 199 482 - -
Viun3g00848 608 MobiDBLite consensus disorder prediction 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00848 Viun-Chr3 5187805 5193563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00848 1 521 MAP Kinase Kinase Kinase AT1G53570 58.011 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun3g00848 Pkinase 1.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00848 K04421 - gmx:100787064 906.36