Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00844 ATGAACCACTCTCAAAACACCATTCCCCCCCTATTCAGATGCCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCCAACATAGAAAAATGGCTTGCTGCTGGTAACCTCACTTGTCCGGTCACAATGCAAAAGCTTCACGATCCTTCCATTGTTCCCAACCACACTCTTCGTCACTTGATCGATCAGTGGCTTCAACTGGGTCCCTTGTTCGACCCTTCCAACCCTGAAACTTCAACTTCTGACTCCTTGGCTTCTCTCAAGCGCAACCTTGAATCCCATGAAAGCAGCTTAGATACCAAGCTCCAAGCACTCACCAAAATCAGTCTCTTATCCGATGAGTATTGCTCCTTCAACAAATCATGCTTTCTCCAATTGAACTTCTTACCACTGCTTTTGGAACTGGTTTTTGGAACTCCAGTATCAATAGATCACATGAACTTCATAGAGCTCGCACTTTGCTGCATTCAGAAATTGCTGCCACTCGGTAGTTTGGAGCCTCTAAATATTATCAAAGATGGGTCTAAATTAGCCATGTTTGTGGTACTAATTGAAAAGGGTAGTAACTCGGTTAAGACTAGCTTGTGCCGTGTTATAGAGTCAGCATCATGGTCATCTGAGACAGAAGAATTATGCTATATTCTTGGAAACTCTCCCAAACTAGTACACGAGATTGTTCAAATTGTTAACCAAAACTATGAAGTTTCTGGGGATGCAATTAAAGCCATGTCAGCACTGTGTTCGTTGCAATCCAATAGAGAGAGTTTGGTGAGAGGAAGAGCAATAGATGGAATCATGAGATACATCTCATCAGGAAGAAGAAACATGGCCCCACTGGCAGTGAGAACAGTTGAGAAACTTATGGAGCTGGAAAGTGGTAGAGTGGCATTGGTGAATCACCCTAATGGTGTTCGAACTTTGGTTAATATGGTTTTCAAGGTATCTGATCAAGAATGCAGTGAGAGTGCTGTTGAGGTGCTTTTAGTTGTTTGTGGTGAGTTTGAGCGTGCACGAGAGACAGCCATTGAAAGTGGAGTTTTGACTAGGTTGTTGTTGCTCCTGCAGAGTCAGAGTAGTAACACAACAAAATCAAAGGCAAGAATGCTACTCAAATTGCTAAGATCAGAGTCAAGGCAGAATTAG 1173 0.4297 MNHSQNTIPPLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPSNPETSTSDSLASLKRNLESHESSLDTKLQALTKISLLSDEYCSFNKSCFLQLNFLPLLLELVFGTPVSIDHMNFIELALCCIQKLLPLGSLEPLNIIKDGSKLAMFVVLIEKGSNSVKTSLCRVIESASWSSETEELCYILGNSPKLVHEIVQIVNQNYEVSGDAIKAMSALCSLQSNRESLVRGRAIDGIMRYISSGRRNMAPLAVRTVEKLMELESGRVALVNHPNGVRTLVNMVFKVSDQECSESAVEVLLVVCGEFERARETAIESGVLTRLLLLLQSQSSNTTKSKARMLLKLLRSESRQN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00844 390 SUPERFAMILY RING/U-box 6 76 - -
Viun3g00844 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Viun3g00844 390 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Viun3g00844 390 SUPERFAMILY ARM repeat 95 382 IPR016024 -
Viun3g00844 390 PANTHER WDSAM1 PROTEIN 5 389 IPR045185 GO:0061630
Viun3g00844 390 Coils Coil 94 114 - -
Viun3g00844 390 CDD RING-Ubox_PUB 9 56 IPR045210 -
Viun3g00844 390 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Viun3g00844 390 Gene3D - 84 294 IPR011989 -
Viun3g00844 390 Gene3D - 295 390 IPR011989 -
Viun3g00844 390 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Viun3g00844 390 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00844 Viun-Chr3 5168517 5170429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00844 8 384 U-box Gene Family AT1G49780 30.848 2.33e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00844 - - vum:124836871 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00844 3 5168517 5170429 Viun3g00844 3 5168517 5170429 ECH