Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00836 ATGATGGCTTGTGGAAGTGTCAACCTTCCTCCTGGCTTTTGCTTCTCTCCAACTGATGAAGAACTTCTCCTTCACTTTCTTTATCCCAAAACCTCTCTACCATGCCATCCCAACATCATTCCAGACCTTGACCTCTCTCTGCATCATCCATGGCAGCTAAATGGTAAAGCGTTGTCAAGTGGAAATCAACACTATTTCTTCACCAGAGTGAAGGAAAACAGATCCACAGAAAATGGGTATTGGAAGGAAATAGGAGTGACAGAAGCAATAGTATCTGCATCTGAAAAAGTGGGGTTTAAGAAGTACCTTGTGTTCAACCATGGTGAAGCTCCACAAGCCACTGCAACCAGTTGGTTCATGCAAGAGTATCATATTTGCTCATCCAGTTTTAGCACTGCATCTTGTGGAAGTACTCGAGGAAGAAGAAAATCTGATCAGTGTAGGAGTAAATGGGTTTTGTGCAAAGTCTATGAGAAGAAAAGTTGTGAACCCAAACAAGGTGTAAACTGTTACAACGATGAGAATGACAATGGAACTGAGCTTTCATGGCTAGATGAATTTTATATGTCACTAGATGATGACCTTGAAGAAGTTATGAGCCTTCCAAATTAG 612 0.4134 MMACGSVNLPPGFCFSPTDEELLLHFLYPKTSLPCHPNIIPDLDLSLHHPWQLNGKALSSGNQHYFFTRVKENRSTENGYWKEIGVTEAIVSASEKVGFKKYLVFNHGEAPQATATSWFMQEYHICSSSFSTASCGSTRGRRKSDQCRSKWVLCKVYEKKSCEPKQGVNCYNDENDNGTELSWLDEFYMSLDDDLEEVMSLPN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00836 203 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Viun3g00836 203 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Viun3g00836 203 PANTHER NAC TRANSCRIPTION FACTOR 56 9 171 - -
Viun3g00836 203 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Viun3g00836 203 Pfam No apical meristem (NAM) protein 10 125 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00836 Viun-Chr3 5136355 5137852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00836 1 162 NAC Transcription Factor Family AT1G69490 40.116 5.58e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g00836 NAM 7.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00836 - - gmx:100779578 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00836 3 5136355 5137852 Viun3g00836 3 5136355 5137852 ECH