Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00833 ATGCAAGGCTGTGAGGTTGAGGCCATTGGCATAGACTACACCATCCACACACACAAATCAGAGCACCCTTTTAAAATCTTCAGCAAATCTGCACAACTTGATACTGAACAAGATGGTAAAGAGCCAGAAGGGGAAGCAGAAGCTGAACAAAGTTGCAGTGGAGTAAGACATGTGCTGAAGAAAGTGAGTTTCCAAGCCAAACCATGGGAGATCCTAGCAATTGTTGGGCCAAGTGGAGCTGGCAAATCATCACTGCTTGAGATTCTGGCTGGCAAACATAGCCCTCAAAGTGGTACTGTGTTGGTGAACCACAAGCCTGTGGACAAAGCTCAGTTCAGGAAGCTTTCAGGGTATGTGACACAAAAGGACACTTTGTTTCCTTTGCTTACAGTTGAAGAAACCCTGATGTTTAGTGCAAAGCTGAGGCTGAAGCTTTCTCAGGAGGAACTTTGTTCCAGGGTCAAGTCATTGATTAAGGAGCTTGGACTTGACCACGTTGCTGGCACTAGAATTGGCGATGATAGGGTCCGAGGCATATCTGGTGGTGAGAGGCGCAGAGTTTCCATTGGTGTTGAAGTCATACATGAACCAAAAGTGCTGATTCTTGATGAACCAACTTCAGGGCTTGACAGTACTTCGGCTTTGCAAATAATTGACATGCTTAAGGTCATGGCTGACACAAGAGGGAGAACTATAATCCTTAGTATCCATCAACCCGGGTTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCCAATGGAAGTGTTTTGCACCATGGAACTGCTGAGTTGCTTAGTGTAAATCTAAGGTTGATGGGTTTGGAGCTTCCTCTTCATGTCAATGTAGTTGAATTTGCCATTGAGTCCATCGATACCATTCAGCAACAACAGAAATGTGAGCCAGTTCAGGTGGAAACTCCAAGGCTATTGCCAGGGACAATGCAACAGAAAAAAATTGATGATGAAGCTGGTGAGATTAGGAACGGTAAGTTTACCTTGCAACAGCTGTTTCAGCAATCCAAGGTAATCGATGAAGAAACCATCTTCGTTGGAATGGATTTCACTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTCACCCATAGGTTTTCCAAGAACATATTTCGCACAAAAGAGCTATTTGCTTGTAGGACAATTCAGATGCTGGTTTCTGGGTTGGTTGTGGGTTCCATATTTTGTAACCTTAAGGATGATCTAGAGGGAGCTTATGAAAGGGTGGGTCTATTTGCTTTCATATTAACGTTTTTGTTGTCAAGCAGCATAGAAGCTCTGCCCATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAAACATCTAGTGGAAGCTACCGTGTGTCATCCTATGCAATTGCCAATGGCCTAGTTTACTTGCCATTTCTTCTCATCCTAGCCATTTTGTTCTCAATGCCCTTGTACTGGCTTGTTGGTCTCAACCGGAATTTCTTGGCCTTTTTGCACTTTTTGTTGCTGATATGGCTGATTCTTTACACGGCCAATTCAGTTGTGGTGTGTTTTAGTGCTCTGGTGCCTAATTTTATTGTTGGGAATTCAGTGATTGCTGGTGTTATAGGGTCATTCTTCTTGTTCTCTGGGTACTTCATATCAAAGGAAGAAATTCCAAACTACTGGATTTTCATGCATTATATATCCTTGTTCAAATATCCCTTTGAAGGGTTCCTGATCAACGAGTTCTCCAACTCGGGGAAGTGTTTGGAGCACATGTTTGGGGCATGTCTTAAGAGCGGAGAGGATGTCCTTGAAGAAGAAGGGTACGGAGGAGAGAGTAACAGATGGAAGAATGTTGGGGTCACTGTGTGCTTCATCTTGGTTTACAGGTTCATCTCTTATGTCATTCTTAGATACAGATGTTCCCAAAGGAGATTTGGCAAGGTTATCACCAACTAG 1941 0.4297 MQGCEVEAIGIDYTIHTHKSEHPFKIFSKSAQLDTEQDGKEPEGEAEAEQSCSGVRHVLKKVSFQAKPWEILAIVGPSGAGKSSLLEILAGKHSPQSGTVLVNHKPVDKAQFRKLSGYVTQKDTLFPLLTVEETLMFSAKLRLKLSQEELCSRVKSLIKELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHEPKVLILDEPTSGLDSTSALQIIDMLKVMADTRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTAELLSVNLRLMGLELPLHVNVVEFAIESIDTIQQQQKCEPVQVETPRLLPGTMQQKKIDDEAGEIRNGKFTLQQLFQQSKVIDEETIFVGMDFTCDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLVSGLVVGSIFCNLKDDLEGAYERVGLFAFILTFLLSSSIEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYLPFLLILAILFSMPLYWLVGLNRNFLAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFFLFSGYFISKEEIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEHMFGACLKSGEDVLEEEGYGGESNRWKNVGVTVCFILVYRFISYVILRYRCSQRRFGKVITN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00833 646 Pfam ABC-2 type transporter 368 576 IPR013525 GO:0016020|GO:0140359
Viun3g00833 646 Pfam ABC transporter 59 207 IPR003439 GO:0005524
Viun3g00833 646 SMART AAA_5 68 257 IPR003593 GO:0016887
Viun3g00833 646 Gene3D - 47 307 IPR027417 -
Viun3g00833 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 267 IPR027417 -
Viun3g00833 646 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 280 IPR003439 GO:0005524
Viun3g00833 646 FunFam ABC transporter G family member 5 44 304 - -
Viun3g00833 646 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Viun3g00833 646 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 45 626 - -
Viun3g00833 646 CDD ABCG_EPDR 53 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00833 Viun-Chr3 5120512 5122906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00833 57 285 Calmodulin-binding Proteins AT2G36910 25.417 3.58e-14 74.3