Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00822 ATGGAAGATGAAAACCATAACACTTTGCCAAATGGTTTTAACTCTGCAAGCCCCGAAAGCCCTTGCTTAAAGACAACCAACAACAACAACAGCACCAGCACCACCCCAACCACACAGAACAACAACATCAACAATAACCATAATAACAACAACAACAACAATAACCACAACAAAGAACAAGACCGGTTTCTCCCCATTGCCAACGTGGGAAGAATCATGAAAAAGGTTATTCCTTCGAACGGAAAAATCTCCAAGGACGCAAAGGAAACTGTCCAAGAGTGTGTCTCTGAGTTCATCAGCTTTGTGACCGGAGAAGCCTCAGACAAATGTCAGAGGGAGAAGAGAAAGACCATCAATGGTGATGATGTCATTTGGGCCATCACAACCTTAGGGTTTGAGGATTACGTTGAACCCTTGAAAATTTACCTTCAGAAATATAAAGAGATCGAAGGAGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAACAAAGGCTACAACAGCACCAACAAAATAACAGTAACAGTAGCCAAGACGATAATAACCAACAATTCAATGGTGCATATGCCTCCACCAATCTCATTTCTCAGCCCCCATATGTCACCACTGATCAGAAGTTTTCGTTACCCTTTTCCCCAAACTCCATTCAGAATCACCAGATTGATTCTGTGGGGCACTGGTACGAATAA 690 0.4203 MEDENHNTLPNGFNSASPESPCLKTTNNNNSTSTTPTTQNNNINNNHNNNNNNNNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKIYLQKYKEIEGEKLNIPKQLRSEQRLQQHQQNNSNSSQDDNNQQFNGAYASTNLISQPPYVTTDQKFSLPFSPNSIQNHQIDSVGHWYE 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00822 229 MobiDBLite consensus disorder prediction 7 59 - -
Viun3g00822 229 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Viun3g00822 229 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Viun3g00822 229 PRINTS CCAAT-binding transcription factor subunit A signature 129 147 - -
Viun3g00822 229 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 32 183 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun3g00822 229 MobiDBLite consensus disorder prediction 163 185 - -
Viun3g00822 229 FunFam Nuclear transcription factor Y subunit B-3 51 178 - -
Viun3g00822 229 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 63 127 IPR003958 -
Viun3g00822 229 MobiDBLite consensus disorder prediction 1 59 - -
Viun3g00822 229 SUPERFAMILY Histone-fold 60 179 IPR009072 GO:0046982
Viun3g00822 229 Gene3D Histone, subunit A 49 188 IPR009072 GO:0046982
Viun3g00822 229 ProSitePatterns NF-YB/HAP3 subunit signature. 94 110 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00822 Viun-Chr3 5067595 5068433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00822 58 227 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.286 2.53e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun3g00822 CBFD_NFYB_HMF 5.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00822 K08065 - gmx:100778216 317.39