Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00814 ATGGCGAACAACAAGAGCTCCAAGAAACCAATGAGTCTCAATGATAGTCACTATCGCTTCCTCCAAGAACATTCCGCTCCCCCCAAACCCTCTTCCAAACATGAAGAATCGATCGAATCCTCCACGAGGAAACAACAACACCAAAACATTCCTCAATTTTCCGCAATCACCGACTTCGATTCTCCAATCGGGTTAGCATCGGACGAGAAACACGAACCGATCAAGGTACATGAAGCCGAAGAAGTTGTAGCTCCGTTCAACGATATTTCTACTACTAGGCAAGACTTGGACAAGAAACATAAGCCAATCATCTTTCAAGAAGAAGAGCAAGAAGAAGAAGAAGAAGGTTCGTCCAACGTGGTTAGTTCTTCCTCTGGGCAAAACTCGGATGAGAAACCCGGACCGATGTTTTTTGAAGAAGAAGCTCCACCCGACGTGGTTGATTTTTCCCCAAAGGAAGAAAGGACGACGAAGGTGAAAGTACAGGGACGGCGGCGCCTCTGTAAGATTGTGCATGAAGACGCCGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCGCCGATTCCCGTGCCCAGAAGCGTCGTCCAGATTGAGGAGAGTGAGGGCAAGAATGAAATTAGGGATATTTTGTCTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAATCGTGTTGAGGGTTTGGTTGCAGGTAAAGAAAGTCACGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCGTCGTTTTCTCCGCAGCAGGAGAGCTTGACTGAGGGTAATAAGAATGAAGATGGCGACTGTACTGAGTATGATTCAGAGGATTCGGTTCAAGTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTTTGAGTGGACCCAGGTCAACTTATAAGTTGCCTGCTAAAATTGGGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGTATTGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATATGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGAAGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTATCCGAGAAGACAAGAGAATATTGTGGAACTTCTGCAAAACTCAGAGAATACGAACTTCAGTATATACTTCAGGACAAAGGCGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAGTAATTATTTAAATGACGAGGAAAGTGAAGATGACGCTACATGGGACTACATGATACTGGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCGTTGCAAAATAATCTTAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGACTTGCTTGGTGACAACAAATGGTTCAGAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGATAAACGTGTTGGTTCATCTATAGCACAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATGTTGAGAAAACAACTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACAAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCTCTGGCGGCCCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTAGCAAAGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGGCGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAATGCCTACTGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGCCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTGGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTTGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGAAGAAAGAACAGATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTCGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTTTTTCAAAGCACATATAGAGTTCTTGAAGAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTGTTTTCAAAGACAGGGCCGCAGGTTCGCGATGAACTCGAGGATGATGAAGTTACAAGGAATCATGCGACTAGGTATATTGGGACTTCGAGATCATCTTCAAATGACCATATTACTTACGGCTCCGAGTTTGCATTTAATCCTAAGAATGTTACCACAAGCAAAAAAAGTTCATCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACGCTCTCAAATGCGGCTATGATTTCTAAGTTACCTGATAAGGGCGAGAAACTGCAGAAACGTCTTGCGGAACTGAGTTCAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTCAACAAGGGTTGAATCTATAA 3090 0.4288 MANNKSSKKPMSLNDSHYRFLQEHSAPPKPSSKHEESIESSTRKQQHQNIPQFSAITDFDSPIGLASDEKHEPIKVHEAEEVVAPFNDISTTRQDLDKKHKPIIFQEEEQEEEEEGSSNVVSSSSGQNSDEKPGPMFFEEEAPPDVVDFSPKEERTTKVKVQGRRRLCKIVHEDAGKSVAVDESKFDELIDLDSPIPVPRSVVQIEESEGKNEIRDILSELNAKFELLSVERKPRPNRVEGLVAGKESHDDEGLEYGSAGSSFSPQQESLTEGNKNEDGDCTEYDSEDSVQVMDNFVPENDGSITLSGPRSTYKLPAKIGKMLYPHQREGLTWLWSLYCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYCGTSAKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSNYLNDEESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDNKWFREKFEKPILRGNDKHASDRDKRVGSSIAQELRDRIQPYFLRRMKSEVFSQDVEKTTAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEANVATKLAKHIADVGDTERFKDEQGVSCKISFIMSLLDNLIPEGHCVLIFSQTRMMLNLIQECLLSQGYDFLRIDGTTKANDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDFFKAHIEFLKSQGIAGVSHHSLLFSKTGPQVRDELEDDEVTRNHATRYIGTSRSSSNDHITYGSEFAFNPKNVTTSKKSSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSSELAELKSERNVIDLDDFTTEFQQGLNL 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00814 1029 MobiDBLite consensus disorder prediction 64 82 - -
Viun3g00814 1029 Gene3D - 582 878 IPR027417 -
Viun3g00814 1029 SMART ultradead3 318 521 IPR014001 -
Viun3g00814 1029 MobiDBLite consensus disorder prediction 1 155 - -
Viun3g00814 1029 MobiDBLite consensus disorder prediction 117 131 - -
Viun3g00814 1029 FunFam Protein CHROMATIN REMODELING 24 302 580 - -
Viun3g00814 1029 Pfam Helicase conserved C-terminal domain 680 792 IPR001650 -
Viun3g00814 1029 MobiDBLite consensus disorder prediction 945 961 - -
Viun3g00814 1029 MobiDBLite consensus disorder prediction 92 107 - -
Viun3g00814 1029 Pfam SNF2-related domain 336 630 IPR000330 GO:0005524|GO:0140658
Viun3g00814 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 861 IPR027417 -
Viun3g00814 1029 Coils Coil 990 1017 - -
Viun3g00814 1029 Gene3D - 306 581 IPR038718 -
Viun3g00814 1029 PANTHER SNF2/RAD54 FAMILY MEMBER 50 1010 - -
Viun3g00814 1029 MobiDBLite consensus disorder prediction 242 284 - -
Viun3g00814 1029 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 683 842 IPR001650 -
Viun3g00814 1029 SMART helicmild6 709 792 IPR001650 -
Viun3g00814 1029 CDD SF2_C_SNF 672 803 - -
Viun3g00814 1029 MobiDBLite consensus disorder prediction 28 42 - -
Viun3g00814 1029 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 335 510 IPR014001 -
Viun3g00814 1029 MobiDBLite consensus disorder prediction 945 965 - -
Viun3g00814 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 560 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00814 Viun-Chr3 5010070 5018885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00814 678 846 RAD5 or RAD16-like Gene Family AT5G22750 34.320 9.85e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun3g00814 SNF2_N 1e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00814 K20093 - gmx:100779283 1647.87