Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00813 ATGGCGAACAACAAGAGCTCCAAGAAACCAATGAGTCTCAATGATAGTCACTATCGCTTCCTCCAAGAACATTCCGCTCCCCCCAAACCCTCTTCCAAACGTTTCGATGAAGAATCGATCGAATCCTCCACGAGGAAACAACAACACCAAAACATTCCTCAATTTTCCGCAATCACCGACTTCGATTCTCCAATCGGGTTAGCATCGGACGAGAAACACGAACCGATCAAGGTACATGAAGCCGAAGAAGTTGTAGCTCCGTTCAACGATATTTCTACTACTAGGCAAGACTTGGACAAGAAACATAAGCCAATCATCTTTCAAGAAGAAGAGCAAGAAGAAGAAGAAGAAGGTTCGTCCAACGTGGTTAGTTCTTCCTCTGGGCAAAACTCGGATGAGAAACCCGGACCGATGTTTTTTGAAGAAGAAGCTCCACCCGACGTGGTTGATTTTTCCCCAAAGGAAGAAAGGACGACGAAGGTGAAAGTACAGGGACGGCGGCGCCTCTGTAAGATTGTGCATGAAGACGCCGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCGCCGATTCCCGTGCCCAGAAGCGTCGTCCAGATTGAGGAGAGTGAGGGCAAGAATGAAATTAGGGATATTTTGTCTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAATCGTGTTGAGGGTTTGGTTGCAGGTAAAGAAAGTCACGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCGTCGTTTTCTCCGCAGCAGGAGAGCTTGACTGAGGGTAATAAGAATGAAGATGGCGACTGTACTGAGTATGATTCAGAGGATTCGGTTCAAGTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTTTGAGTGGACCCAGGTCAACTTATAAGTTGCCTGCTAAAATTGGGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGTATTGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATATGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGAAGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTATCCGAGAAGACAAGAGAATATTGTGGAACTTCTGCAAAACTCAGAGAATACGAACTTCAGTATATACTTCAGGACAAAGGCGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAGTAATTATTTAAATGACGAGGAAAGTGAAGATGACGCTACATGGGACTACATGATACTGGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCGTTGCAAAATAATCTTAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGACTTGCTTGGTGACAACAAATGGTTCAGAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGATAAACGTGTTGGTTCATCTATAGCACAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATGTTGAGAAAACAACTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACAAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCTCTGGCGGCCCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTAGCAAAGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGGCGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAATGCCTACTGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGCCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTGGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTTGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGAAGAAAGAACAGATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTCGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTTTTTCAAAGCACATATAGAGTTCTTGAAGAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTGTTTTCAAAGACAGGGCCGCAGGTTCGCGATGAACTCGAGGATGATGAAGTTACAAGGAATCATGCGACTAGGTATATTGGGACTTCGAGATCATCTTCAAATGACCATATTACTTACGGCTCCGAGTTTGCATTTAATCCTAAGAATGTTACCACAAGCAAAAAAAGTTCATCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACGCTCTCAAATGCGGCTATGATTTCTAAGTTACCTGATAAGGGCGAGAAACTGCAGAAACGTCTTGCGGAACTGAGTTCAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTCAACAAGGGTTGAATCTATAA 3096 0.4289 MANNKSSKKPMSLNDSHYRFLQEHSAPPKPSSKRFDEESIESSTRKQQHQNIPQFSAITDFDSPIGLASDEKHEPIKVHEAEEVVAPFNDISTTRQDLDKKHKPIIFQEEEQEEEEEGSSNVVSSSSGQNSDEKPGPMFFEEEAPPDVVDFSPKEERTTKVKVQGRRRLCKIVHEDAGKSVAVDESKFDELIDLDSPIPVPRSVVQIEESEGKNEIRDILSELNAKFELLSVERKPRPNRVEGLVAGKESHDDEGLEYGSAGSSFSPQQESLTEGNKNEDGDCTEYDSEDSVQVMDNFVPENDGSITLSGPRSTYKLPAKIGKMLYPHQREGLTWLWSLYCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYCGTSAKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSNYLNDEESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDNKWFREKFEKPILRGNDKHASDRDKRVGSSIAQELRDRIQPYFLRRMKSEVFSQDVEKTTAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEANVATKLAKHIADVGDTERFKDEQGVSCKISFIMSLLDNLIPEGHCVLIFSQTRMMLNLIQECLLSQGYDFLRIDGTTKANDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDFFKAHIEFLKSQGIAGVSHHSLLFSKTGPQVRDELEDDEVTRNHATRYIGTSRSSSNDHITYGSEFAFNPKNVTTSKKSSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSSELAELKSERNVIDLDDFTTEFQQGLNL 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00813 1031 MobiDBLite consensus disorder prediction 244 286 - -
Viun3g00813 1031 SMART ultradead3 320 523 IPR014001 -
Viun3g00813 1031 SMART helicmild6 711 794 IPR001650 -
Viun3g00813 1031 Pfam SNF2-related domain 338 632 IPR000330 GO:0005524|GO:0140658
Viun3g00813 1031 FunFam Protein CHROMATIN REMODELING 24 304 582 - -
Viun3g00813 1031 Gene3D - 308 583 IPR038718 -
Viun3g00813 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 863 IPR027417 -
Viun3g00813 1031 CDD SF2_C_SNF 674 805 - -
Viun3g00813 1031 Gene3D - 584 880 IPR027417 -
Viun3g00813 1031 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 337 512 IPR014001 -
Viun3g00813 1031 Pfam Helicase conserved C-terminal domain 682 794 IPR001650 -
Viun3g00813 1031 MobiDBLite consensus disorder prediction 947 967 - -
Viun3g00813 1031 PANTHER SNF2/RAD54 FAMILY MEMBER 80 1012 - -
Viun3g00813 1031 MobiDBLite consensus disorder prediction 29 44 - -
Viun3g00813 1031 MobiDBLite consensus disorder prediction 66 84 - -
Viun3g00813 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 562 IPR027417 -
Viun3g00813 1031 MobiDBLite consensus disorder prediction 119 133 - -
Viun3g00813 1031 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 685 844 IPR001650 -
Viun3g00813 1031 MobiDBLite consensus disorder prediction 947 963 - -
Viun3g00813 1031 MobiDBLite consensus disorder prediction 94 109 - -
Viun3g00813 1031 Coils Coil 992 1019 - -
Viun3g00813 1031 MobiDBLite consensus disorder prediction 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00813 Viun-Chr3 5010070 5018888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00813 680 848 RAD5 or RAD16-like Gene Family AT5G22750 34.320 1.02e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun3g00813 SNF2_N 1e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00813 K20093 - gmx:100779283 1652.88