Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00812 ATGTTTCACTTCTTTCTCTTTTCTTCTTTCTTTTTCCATTTTATTTTCTTTCTCATCAACCTACCTCTTCTCTTTGCAGATGAAGAATCCTCCACCCGGAAACAGCAAGACCAAAACATTCCTCAATTTTCTGCAATCACCGACTTCGATTCTCCAATCGGGTTAGCATCGGACGAGAAACACGAACCGATCAAGGTACATGAAGCCGAAGAAGTTGTAGCTCCGTTCAACGATATTTCTACTACTAGGCAAGACTTGGACAAGAAACATAAGCCAATCATCTTTCAAGAAGAAGAGCAAGAAGAAGAAAAAGGTTCGTCCAACGTGGTTAGTTCTTCCTCTGGGCAAAACTCGGATGAGAAACCCGGACCGATGTTTTTTGAAGAAGAAGCTCCACCCGACGTGGTTGATTTTTCCCCAAAGGAAGAAAGGACGACGAAGGTGAAAGTACAGGGACGGCGGCGCCTCTGTAAGATTGTGCATGAAGACGCCGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCGCCGATTCCCGTGCCCAGAAGCGTCGTCCAGATTGAGGAGAGTGAGGGCAAGAATGAAATTAGGGATATTTTGTCTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAATCGTGTTGAGGGTTTGGTTGCAGGTAAAGAAAGTCACGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCGTCGTTTTCTCCGCAGCAGGAGAGCTTGACTGAGGGTAATAAGAATGAAGATGGCGACTGTACTGAGTATGATTCAGAGGATTCGGTTCAAGTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTTTGAGTGGACCCAGGTCAACTTATAAGTTGCCTGCTAAAATTGGGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGTATTGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATATGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGAAGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTATCCGAGAAGACAAGAGAATATTGTGGAACTTCTGCAAAACTCAGAGAATACGAACTTCAGTATATACTTCAGGACAAAGGCGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAGTAATTATTTAAATGACGAGGAAAGTGAAGATGACGCTACATGGGACTACATGATACTGGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCGTTGCAAAATAATCTTAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGACTTGCTTGGTGACAACAAATGGTTCAGAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGATAAACGTGTTGGTTCATCTATAGCACAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATGTTGAGAAAACAACTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACAAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCTCTGGCGGCCCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTAGCAAAGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGGCGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAATGCCTACTGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGCCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTGGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTTGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGAAGAAAGAACAGATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTCGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTTTTTCAAAGCACATATAGAGTTCTTGAAGAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTGTTTTCAAAGACAGGGCCGCAGGTTCGCGATGAACTCGAGGATGATGAAGTTACAAGGAATCATGCGACTAGGTATATTGGGACTTCGAGATCATCTTCAAATGACCATATTACTTACGGCTCCGAGTTTGCATTTAATCCTAAGAATGTTACCACAAGCAAAAAAAGTTCATCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACGCTCTCAAATGCGGCTATGATTTCTAAGTTACCTGATAAGGGCGAGAAACTGCAGAAACGTCTTGCGGAACTGAGTTCAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTCAACAAGGGTTGAATCTATAA 3057 0.4243 MFHFFLFSSFFFHFIFFLINLPLLFADEESSTRKQQDQNIPQFSAITDFDSPIGLASDEKHEPIKVHEAEEVVAPFNDISTTRQDLDKKHKPIIFQEEEQEEEKGSSNVVSSSSGQNSDEKPGPMFFEEEAPPDVVDFSPKEERTTKVKVQGRRRLCKIVHEDAGKSVAVDESKFDELIDLDSPIPVPRSVVQIEESEGKNEIRDILSELNAKFELLSVERKPRPNRVEGLVAGKESHDDEGLEYGSAGSSFSPQQESLTEGNKNEDGDCTEYDSEDSVQVMDNFVPENDGSITLSGPRSTYKLPAKIGKMLYPHQREGLTWLWSLYCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYCGTSAKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSNYLNDEESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDNKWFREKFEKPILRGNDKHASDRDKRVGSSIAQELRDRIQPYFLRRMKSEVFSQDVEKTTAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEANVATKLAKHIADVGDTERFKDEQGVSCKISFIMSLLDNLIPEGHCVLIFSQTRMMLNLIQECLLSQGYDFLRIDGTTKANDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDFFKAHIEFLKSQGIAGVSHHSLLFSKTGPQVRDELEDDEVTRNHATRYIGTSRSSSNDHITYGSEFAFNPKNVTTSKKSSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSSELAELKSERNVIDLDDFTTEFQQGLNL 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00812 1018 CDD SF2_C_SNF 661 792 - -
Viun3g00812 1018 Gene3D - 571 867 IPR027417 -
Viun3g00812 1018 SMART ultradead3 307 510 IPR014001 -
Viun3g00812 1018 MobiDBLite consensus disorder prediction 934 950 - -
Viun3g00812 1018 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 831 IPR001650 -
Viun3g00812 1018 SMART helicmild6 698 781 IPR001650 -
Viun3g00812 1018 MobiDBLite consensus disorder prediction 231 273 - -
Viun3g00812 1018 Pfam Helicase conserved C-terminal domain 669 781 IPR001650 -
Viun3g00812 1018 FunFam Protein CHROMATIN REMODELING 24 291 569 - -
Viun3g00812 1018 Gene3D - 295 570 IPR038718 -
Viun3g00812 1018 PANTHER SNF2/RAD54 FAMILY MEMBER 143 999 - -
Viun3g00812 1018 MobiDBLite consensus disorder prediction 106 120 - -
Viun3g00812 1018 MobiDBLite consensus disorder prediction 934 954 - -
Viun3g00812 1018 Coils Coil 979 1006 - -
Viun3g00812 1018 MobiDBLite consensus disorder prediction 96 144 - -
Viun3g00812 1018 Pfam SNF2-related domain 325 619 IPR000330 GO:0005524|GO:0140658
Viun3g00812 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 549 IPR027417 -
Viun3g00812 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 852 IPR027417 -
Viun3g00812 1018 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 499 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00812 Viun-Chr3 5010070 5029419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00812 667 835 RAD5 or RAD16-like Gene Family AT5G22750 34.320 8.87e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun3g00812 SNF2_N 1e-49 CL0023