Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00800 ATGCAAGGAGAATTGGAATTACCACCCGGGTTTAGATTCCACCCCACTGACGATGAACTCGTGAATCACTACTTGTGTAGAAAGTGTGCTGCTCAATCCATTGCCGCTCCCATCATCAAAGAAATCGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGACATGGCTCTTTACGGTGAGAAAGAGTGGTACTTTTTCTCCCCTCGTGACCGAAAATACCCTAACGGTTCACGACCGAACCGGGCCGCGGGAACCGGCTACTGGAAGGCCACCGGAGCGGATAAACCGATTGGAAAACCGGAAGCCCGTGGAATTAAGAAAGCCCTTGTGTTCTACGCGGGGAAAGCCCCGAAAGGAGTCAAGACAAATTGGATCATGCACGAATATCGCTTGGCCAACGTCGATAGATCTGCCTCCAAGAAAAACAACAATTTGAGGCTTGATGATTGGGTGCTATGTCGGATTTACAACAAGAAAGGGAAGATTGAGAAGTACAATAATGTCGACGGGGTGGTGGAACAGAAACCGGCGAAATTACCGGAGGAGATTCTGTTCCAGCACGAGATGAAGCCTGAGATCCAGATGTACGACCACGATCATTTCAGGAACAACCAATTGTACATGGACACGTCGGATTCGGTGCCGAGGTTAAACACGGACTCTAGCTGCTCCGAGCACGTGGTTTCGCCGGACGGCACCTGCGAGAAGGAGGTGCAGAGCGAGCCCAAGTGGAACGACCTGGAGTTGGGCCCGGACCTGGTTTCGGGCTACGATTTTAACTTCATGGAGCTATCAGCAGATGACGCTTTTGCTCCTCAGGCCCAATACCAAATGAACCAGCCCTCGACCTGGCAAGATATGTTCGCGTACCTTCCGAAGACATTTTAA 888 0.5045 MQGELELPPGFRFHPTDDELVNHYLCRKCAAQSIAAPIIKEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPEARGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNNVDGVVEQKPAKLPEEILFQHEMKPEIQMYDHDHFRNNQLYMDTSDSVPRLNTDSSCSEHVVSPDGTCEKEVQSEPKWNDLELGPDLVSGYDFNFMELSADDAFAPQAQYQMNQPSTWQDMFAYLPKTF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00800 295 Gene3D NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
Viun3g00800 295 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Viun3g00800 295 FunFam NAC transcription factor 16 162 - -
Viun3g00800 295 PANTHER NAC TRANSCRIPTION FACTOR 56 7 208 - -
Viun3g00800 295 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Viun3g00800 295 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00800 Viun-Chr3 4945775 4947276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00800 1 295 NAC Transcription Factor Family AT1G01720 61.873 2.88e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g00800 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00800 - - gmx:100170751 539.65