Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00796 ATGGGCAGAGAAAATGATTCAGGAAGGACAAAGGAAGAAGTCAGTGATGATGGTTCCTCCACTGTTGAGAATGGAGATTTAGAATCTCATGCTCGAATTAGTCTGGACAAGGAAGGCTTGGAAACTTGTCGTGTGTGCCAATGTACTGAATCTGATAAAAGGGCAGATGCAGCGCTAGAATTTTTGGGCATCACCCCAGGTTCAGAATTGTGTAAAAGCAAGGGGGAAGTAGGGTGTGATGGCAATGGAATTCCCAGAAACATGTCTCTTAACAGAAACATTGAAAAAAATACAGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCATTTGTAAAAGCGATTTGGAACTTGGTTTGTCTCATCAAGATAAACTGGTTGAACTTGGATGTTCTTGTAAAAACGATCTTGCTTTAGTACATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAGTTTCTGACTTCAATAAGGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACTGCTAGTGGTGATCCTGGTCCAGCACAAGCTCGTGCAAATGCTGGTGTGGATCCTGATGCAGTGGCTGCTATTCGGAGGCAACGGCTAATTGAGATTGCACTATGGTTTTGTCCTCATCATAGCAGTACCAATAACAACGTTAGCAATGTGGACACAGTTTCACAGGTTGCTTCTGAGCAGCCTTTGAGTATTGTTACTGAAGATGCTGTCCCTGTACAAAATACTGCAACTAAATGGGCCGTGGAGGGTACAGGAATCCTGCTTGCTACGGGGCTGCTTACCATCACCCTTGCGTGGCTTATAGCCCCTCGTGTTGGAAAGAAAACTGCTAGAAGTGGTCTTCATATCTTACTTGGAGGGGTTTGTGCTTTAGCAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTGTTCGGAATATGGGCTTCAAGAACCCATGGTGCCCATACAACATGA 1083 0.4349 MGRENDSGRTKEEVSDDGSSTVENGDLESHARISLDKEGLETCRVCQCTESDKRADAALEFLGITPGSELCKSKGEVGCDGNGIPRNMSLNRNIEKNTGMVEFVSPDGEVFICKSDLELGLSHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGALKEYEVLRERTASGDPGPAQARANAGVDPDAVAAIRRQRLIEIALWFCPHHSSTNNNVSNVDTVSQVASEQPLSIVTEDAVPVQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00796 360 ProSiteProfiles Zinc finger RING-CH-type profile. 102 168 IPR011016 GO:0008270
Viun3g00796 360 SUPERFAMILY RING/U-box 125 164 - -
Viun3g00796 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 171 IPR013083 -
Viun3g00796 360 PANTHER ZINC FINGER, RING-CH-TYPE 11 327 - -
Viun3g00796 360 SMART ringv_2 112 162 IPR011016 GO:0008270
Viun3g00796 360 MobiDBLite consensus disorder prediction 1 18 - -
Viun3g00796 360 MobiDBLite consensus disorder prediction 1 30 - -
Viun3g00796 360 Pfam RING-variant domain 127 161 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00796 Viun-Chr3 4930364 4934279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00796 1 350 C3H Transcription Factor Family AT5G08750 64.543 4.82e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00796 - - gmx:100805323 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00796 3 4930364 4934279 Viun3g00796 3 4930364 4934279 ECH