Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00792 ATGGGTGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAACAGTACGATCTGTTAGGTAAAATCGGCGAAGGCACTTATGGCCTCGTTTTTCTTGCAAGAACCAAAACCCCCTCTCCCTCCAAATCAATAGCTATCAAGAAGTTCAAGCAGTCCAAGGACGGCGATGGGGTCTCCCCCACCGCCATCCGAGAAATCATGTTGTTGAGGGAGATTACGCACGAGAACGTCGTCAAGCTCGTTAATGTCCACATCAACCACGCCGACATGTCGCTCTACCTCGCCTTCGATTACGCCGAGCACGATCTTTACGAAATTATTAGGCATCACAGGGACAAACTCAACCATTCTATTAATCAATACACGGTTAAGTCTTTACTCTGGCAGTTGCTCAATGGATTAAGTTATCTGCACAGTAATTGGATGATACATCGAGATTTGAAGCCATCAAATATATTGGTTATGGGCGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCAAGGATATATCAAGCTCCTCTGAAGCCACTATCTGATAATGGGGTTGTTGTAACTATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACACTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCGGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTTAAAGCTACATCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAGAAGTGGCCTTCGTTGGCAAGTCTTCCACATTGGCAACAGGACGTGCAACATATACAAGGACACAAATATGACAACACCGGTCTCTATAATGTTGTGCACCTATCTACAAAAAGTCCTGCATACGACCTCCTGTCAAAGATGCTTGAATATGATCCTCGGAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATCGAACCATTACCTGGACGGAATGCTCTTGTACCATGTCAACTTGGAGAGAAAATTGTAAATTATCCAACTCGTCCAGTGGACAACACAACTGATCTTGAAGGGACGACCAATCTGCCGCCTTCACAAGCGATAAGGGAACTGCTTGGAGAAAATGTAGGTGATAGTTAA 1155 0.4519 MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKTPSPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNTGLYNVVHLSTKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDNTTDLEGTTNLPPSQAIRELLGENVGDS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00792 384 Gene3D Transferase(Phosphotransferase) domain 1 99 343 - -
Viun3g00792 384 CDD STKc_CDK8_like 17 327 - -
Viun3g00792 384 SUPERFAMILY Protein kinase-like (PK-like) 13 328 IPR011009 -
Viun3g00792 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Viun3g00792 384 FunFam Putative cyclin-dependent kinase E-1 101 340 - -
Viun3g00792 384 SMART serkin_6 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00792 384 Pfam Protein kinase domain 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00792 384 FunFam Cyclin-dependent kinase e-1 6 100 - -
Viun3g00792 384 ProSiteProfiles Protein kinase domain profile. 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00792 384 Gene3D Phosphorylase Kinase; domain 1 5 98 - -
Viun3g00792 384 PANTHER CELL DIVISION PROTEIN KINASE 16 333 - -
Viun3g00792 384 ProSitePatterns Protein kinases ATP-binding region signature. 24 50 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00792 Viun-Chr3 4905776 4915579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00792 1 373 Core Cell Cycle Gene Families AT5G63610 82.105 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Viun3g00792 Pkinase 5.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00792 K02208 - gmx:100794990 749.969