Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00777 ATGCAGTTCTATCTATGGACTCGACCAGGTGAGTTTTCCTCGGAGATCAAAGAAGTTTATATGTTTCGCCGAAATCTTAGCAGGGTTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACTATCTTGAAAGTCAGTTCAGCTATCAAAGATCCTGATATAGAAGGTGAAGCTCTGTTAGATCTTTTACATTTCCTCAATGATTCCAATAAGCAAATAACGGACTGGGACGGCCATATGGTTAGCCCGTGCTTCAGTTGGTCTCATGTCACTTGTAAAAACGGACATGTCATATCACTGGCCATGGCTTCGGTTGGATTTGTTGGAACACTATCTCCCTCAATTACCAAGTTGAAATATTTGGTTAGCGTGGAATTGCAGAACAACAATCTTTCAGGACCCTTACCCGATTACATTTCCTACTTGAAAGACCTACAATATCTAAATCTTGCTGGCAATAATTTTAGTGGTTCTATACCAGATAAATGGGATGAACTATCCAATCTAAAGTATCTGGATCTTTCATCTAATGCTCTTACTGGAAGGATCCCAATGCAACTCTTTTCAGTTCCAATGTTTAACTTTTCAGACACGCACCTTCAGTGTGGTCCTGGTTTCCAGCAGAGTTGCACTTCTAAATCTGAAAATCCAGATTCAAGCCACAAATCAAAATTGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCCTTTGCACTTCTGTGTCTTGGGGCTATCCTTACATATCGACACCATCAAATGCGTAGGAACCAAAGGGAAGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGCAAAATCTCCCTTGGACAATTGAGAAGATTTTCATGGCGTGAACTACAACTTGCCACCAAAAATTTCAGTGAAGGCAATATAATTGGTCAGGGTGGTTTTGGAAAAGTGTACAAAGGAGTACTCTGTGATAACACCAAAGTAGCTGTGAAACGCCTCGTTGATTATCACAACCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTTATAAGTGTTGCAGTTCACAGAAACCTCTTAAGACTCATTGGCTTCTGCACAACCTCAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTTAGCGTAGCTTATCGACTGAGAGAATTAAAACCTGGTGAGAAAGGCTTGGACTGGCCAACAAGAAAACGCATAGCTTTTGGAACAGCTCATGGTTTGGAGTACCTACACGAGCAATGCAATCCGAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTTCTTGGTGACTTCGGGCTAGCCAAGCTGGTTGATGCAAGGATGACTCATGTGACCACTCAAGTGCGTGGCACAATGGGTCACATTGCCCCAGAATATTTGTCCACAGGAAAATCTTCAGAGAAGACTGATGTGTTTGGATATGGCATAACACTTCTTGAACTAGTGACCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTGATTGATTATGTGAAAAAGATGGTGAGAGAAAAAAGGTTGGAGGACATGGTGGATAGAAATTTGGAGAGGTATGATCCAAAGGAAGTTGAGACGATTCTTCAGGTTGCATTGCTTTGCACACAAGGTTACCCTGAGGATCGTCCAAGCATGTCAGAGGTGGTGAAAATGCTGCAGGGAGTGGGGTTGGCAGATAGATGGGCTGATTGGCAGCAACTTGAAGAGGCTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACGCTTGATCAAGAAGCCATACAACTTTCCAGAGCAAGATAA 1848 0.4226 MQFYLWTRPGEFSSEIKEVYMFRRNLSRVPLKILTRWLIFLTILKVSSAIKDPDIEGEALLDLLHFLNDSNKQITDWDGHMVSPCFSWSHVTCKNGHVISLAMASVGFVGTLSPSITKLKYLVSVELQNNNLSGPLPDYISYLKDLQYLNLAGNNFSGSIPDKWDELSNLKYLDLSSNALTGRIPMQLFSVPMFNFSDTHLQCGPGFQQSCTSKSENPDSSHKSKLAKIVRYASCGAFALLCLGAILTYRHHQMRRNQREVFVDVSGEDESKISLGQLRRFSWRELQLATKNFSEGNIIGQGGFGKVYKGVLCDNTKVAVKRLVDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRELKPGEKGLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKMVREKRLEDMVDRNLERYDPKEVETILQVALLCTQGYPEDRPSMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00777 615 SMART serkin_6 293 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00777 615 FunFam Somatic embryogenesis receptor-like kinase 1 370 586 - -
Viun3g00777 615 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Viun3g00777 615 Pfam Protein kinase domain 294 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00777 615 FunFam Somatic embryogenesis receptor kinase 1 262 369 - -
Viun3g00777 615 Pfam Leucine rich repeat N-terminal domain 56 93 IPR013210 -
Viun3g00777 615 Pfam Leucine rich repeat 122 180 IPR001611 GO:0005515
Viun3g00777 615 ProSiteProfiles Protein kinase domain profile. 293 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00777 615 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 54 213 - -
Viun3g00777 615 Gene3D Ribonuclease Inhibitor 53 222 IPR032675 -
Viun3g00777 615 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 38 576 - -
Viun3g00777 615 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Viun3g00777 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Viun3g00777 615 Gene3D Transferase(Phosphotransferase) domain 1 370 585 - -
Viun3g00777 615 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
Viun3g00777 615 SUPERFAMILY L domain-like 57 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00777 Viun-Chr3 4815649 4820928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00777 38 610 Receptor kinase-like Gene Family AT5G65240 54.892 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun3g00777 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00777 - - gmx:100799227 1093.57