Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00775 ATGTTTCGCCGAAATCTTAGCAGGGTTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACTATCTTGAAAGTCAGTTCAGCTATCAAAGATCCTGATATAGAAGGTGAAGCTCTGTTAGATCTTTTACATTTCCTCAATGATTCCAATAAGCAAATAACGGACTGGGACGGCCATATGGTTAGCCCGTGCTTCAGTTGGTCTCATGTCACTTGTAAAAACGGACATGTCATATCACTGGCCATGGCTTCGGTTGGATTTGTTGGAACACTATCTCCCTCAATTACCAAGTTGAAATATTTGGTTAGCGTGGAATTGCAGAACAACAATCTTTCAGGACCCTTACCCGATTACATTTCCTACTTGAAAGACCTACAATATCTAAATCTTGCTGGCAATAATTTTAGTGGTTCTATACCAGATAAATGGGATGAACTATCCAATCTAAAGTATCTGGATCTTTCATCTAATGCTCTTACTGGAAGGATCCCAATGCAACTCTTTTCAGTTCCAATGTTTAACTTTTCAGACACGCACCTTCAGTGTGGTCCTGGTTTCCAGCAGAGTTGCACTTCTAAATCTGAAAATCCAGATTCAAGCCACAAATCAAAATTGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCCTTTGCACTTCTGTGTCTTGGGGCTATCCTTACATATCGACACCATCAAATGCGTAGGAACCAAAGGGAAGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGCAAAATCTCCCTTGGACAATTGAGAAGATTTTCATGGCGTGAACTACAACTTGCCACCAAAAATTTCAGTGAAGGCAATATAATTGGTCAGGGTGGTTTTGGAAAAGTGTACAAAGGAGTACTCTGTGATAACACCAAAGTAGCTGTGAAACGCCTCGTTGATTATCACAACCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTTATAAGTGTTGCAGTTCACAGAAACCTCTTAAGACTCATTGGCTTCTGCACAACCTCAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTTAGCGTAGCTTATCGACTGAGAGAATTAAAACCTGGTGAGAAAGGCTTGGACTGGCCAACAAGAAAACGCATAGCTTTTGGAACAGCTCATGGTTTGGAGTACCTACACGAGCAATGCAATCCGAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTTCTTGGTGACTTCGGGCTAGCCAAGCTGGTTGATGCAAGGATGACTCATGTGACCACTCAAGTGCGTGGCACAATGGGTCACATTGCCCCAGAATATTTGTCCACAGGAAAATCTTCAGAGAAGACTGATGTGTTTGGATATGGCATAACACTTCTTGAACTAGTGACCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTGATTGATTATGTGAAAAAGATGGTGAGAGAAAAAAGGTTGGAGGACATGGTGGATAGAAATTTGGAGAGGTATGATCCAAAGGAAGTTGAGACGATTCTTCAGGTTGCATTGCTTTGCACACAAGGTTACCCTGAGGATCGTCCAAGCATGTCAGAGGTGGTGAAAATGCTGCAGGGAGTGGGGTTGGCAGATAGATGGGCTGATTGGCAGCAACTTGAAGAGGCTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACGCTTGATCAAGAAGCCATACAACTTTCCAGAGCAAGATAA 1788 0.4228 MFRRNLSRVPLKILTRWLIFLTILKVSSAIKDPDIEGEALLDLLHFLNDSNKQITDWDGHMVSPCFSWSHVTCKNGHVISLAMASVGFVGTLSPSITKLKYLVSVELQNNNLSGPLPDYISYLKDLQYLNLAGNNFSGSIPDKWDELSNLKYLDLSSNALTGRIPMQLFSVPMFNFSDTHLQCGPGFQQSCTSKSENPDSSHKSKLAKIVRYASCGAFALLCLGAILTYRHHQMRRNQREVFVDVSGEDESKISLGQLRRFSWRELQLATKNFSEGNIIGQGGFGKVYKGVLCDNTKVAVKRLVDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRELKPGEKGLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKMVREKRLEDMVDRNLERYDPKEVETILQVALLCTQGYPEDRPSMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00775 595 Gene3D Ribonuclease Inhibitor 33 202 IPR032675 -
Viun3g00775 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 556 - -
Viun3g00775 595 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Viun3g00775 595 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00775 595 Gene3D Transferase(Phosphotransferase) domain 1 350 565 - -
Viun3g00775 595 SUPERFAMILY L domain-like 37 172 - -
Viun3g00775 595 FunFam Somatic embryogenesis receptor-like kinase 1 350 566 - -
Viun3g00775 595 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Viun3g00775 595 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00775 595 ProSiteProfiles Protein kinase domain profile. 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00775 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Viun3g00775 595 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 34 193 - -
Viun3g00775 595 SUPERFAMILY Protein kinase-like (PK-like) 251 547 IPR011009 -
Viun3g00775 595 FunFam Somatic embryogenesis receptor kinase 1 242 349 - -
Viun3g00775 595 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Viun3g00775 595 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00775 Viun-Chr3 4815180 4820928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00775 18 590 Receptor kinase-like Gene Family AT5G65240 54.892 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun3g00775 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00775 - - gmx:100799227 1093.57