Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00774 ATGAGCAGTCCTCCGGTGAGTTCGTCGGCGGTGGCATACGAAGCATGGACAAGCCTGGCAGTGCCGGATTGGTTGAACAAAGGAGATAACGCATGGCAAATGGTGTCGGCGACGTTGGTGGGGATCCAAAGCATGCCGGGCCTCGTCATTCTCTACGGAAGCATCGTCAAAAAGAAATGGGCCGTCAACTCCGCCTTCATGGCGCTCTACGCTTTTGCGGCGGTCGTCATCTGCTGGGTCACCTGGGCCTACAAGATGTCCTTCGGGGAGAAGCTGCTGCCCTTCTGGGGCAAGGCCGGGCCGGCGCTGGGCCAGAGGTTTCTCATAAAGCAGGCGGGCCTCCCCGCCACGCCGCACCACTTCAGTAACGGCGCGTTGGAGACCGCGGAGATCGAACCCTTTTACCCGATGGCTACCATGGTCTGGTTCCAGTGCGTGTTCGCCGCCATTGCTCTTGTCATCTTGGCCGGCTCCGTTCTGGCTCGGATGAACTTCAAGGCCTGGATGATGTTCGTGCCGCTCTGGCTCACCTTCTCTTACACCATCGGCGCTTTCAGCTTGTGGGGCGGAGGCTTCCTGTTCCATTGGGGCGTCATGGATTACTCCGGCGGTTACGTCATTCATCTCTCTTCTGGGATTGCTGGCTTCACTGCAGCATATTGGGTGGGGCCGAGATCGAAGAGGGACAGAGAGAGGTTCCCGCCGAACAATGTGCTACTGATGTTGGCCGGTGCGGGGCTGCTGTGGCTGGGATGGGCGGGTTTCAACGGAGGAGATCCGTACGCGGCGAACACGGACTCATCGATGGCGGTGCTGAACACCAACATCTGCGCCGCCACCAGCCTCCTCGTATGGACGTGGTTGGACGTTATTTTCTTCAAAAAGCCCTCAGTTATTGGAGCCGTTCAGGGCATGATAACTGGCCTTGTTTGCATCACTCCCGGAGCTGGTCTGGTTCAAGGATGGGCTGCGATAGTGATGGGAGTGCTTTCGGGGAGTGTGCCATGGTTCAGCATGATGGTGTTGGGAAAAAAGTTGAAAATATTTCAAATGGTTGATGACACACTTGCAGTGTTCCACACCCATGCCGTGGCGGGTCTTCTCGGAGGAATACTCACCGGCCTATTTGCGGAGCCAAACCTAAGCACACTCTTTCTTCCGGTCACCAATTCCAAAGGAGGAATCTACGGCGGCCCCGGAGGAGTTCAGATTCTGAAGCAAATCGTGGGAGCTCTCTTCATCATTGGCTGGAACCTCGTGGCCACTTCAATCATTTGTGTGTTCATCAATTTCATAGTTCCGCTCAGAATGACAGAGGAAGAGCTTCTCATCGGAGATGATGCCGTTCATGGAGAAGAGGCTTATGCACTGTGGGGTGATGGTGAGAAACTTAGCATCTACAAAGATGATACCACACACCATGGCATCATCGTCTCTAGTGGTGCCACTCAAGTCGTTTAA 1461 0.553 MSSPPVSSSAVAYEAWTSLAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGEKLLPFWGKAGPALGQRFLIKQAGLPATPHHFSNGALETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKRDRERFPPNNVLLMLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFSMMVLGKKLKIFQMVDDTLAVFHTHAVAGLLGGILTGLFAEPNLSTLFLPVTNSKGGIYGGPGGVQILKQIVGALFIIGWNLVATSIICVFINFIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSIYKDDTTHHGIIVSSGATQVV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00774 486 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Viun3g00774 486 FunFam Ammonium transporter 12 458 - -
Viun3g00774 486 NCBIfam ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Viun3g00774 486 SUPERFAMILY Ammonium transporter 24 437 - -
Viun3g00774 486 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Viun3g00774 486 PANTHER AMMONIUM TRANSPORTER MEP2 16 464 IPR001905 GO:0008519|GO:0016020|GO:0072488
Viun3g00774 486 Gene3D Ammonium transporter AmtB like domains 5 458 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00774 Viun-Chr3 4809335 4812643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00774 137 474 Inorganic Solute Cotransporters AT2G38290 71.302 1.14e-167 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00774 K03320 - gmx:100785993 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00774 3 4809335 4812643 Viun3g00774 3 4809335 4812643 ECH