Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00762 ATGCCTCTTTTAAGGAGAAAGCCTTTTGCCTTGGCTGAGCCCCCCGAGGAATTGAAGCCAGACGAGCCTGTTTACCAAATTCGATTTACAAAAGAAATCTTTCGAGATTATCCTGATTATTTGAAGCAATTGAATCAATACCGTCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTATGGTGTCTGAACAGCATGCTACTGAGAAAGTTCAACAGTTTCCTAAGGAATTAATGACTACTGCTTTAGGGATTATTCAATACAGCATGCTCCCTTTAAAGGATCTTGCTGATTCTATTGGTGAAAAATTGCAGAAACGTTTGTTTGTCGGTGCTGAGCTACATGGGAAAAAGGGTGATGGAGTACATCCATGCAGAATATTAAAAGTAATTCAGAAAGGAGTTGACACATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAAAGTATAAGTGAACAAGCTGAACTCTGTGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGGGAATCTACATGCCGGAATGCCCCATGGGTTTTACATGATGAACTAGCAAAAAGTCATGGAATATCAACTGACATTCCTGAAGAATTAAGAGGGAGGGTTTTTTACAGAGATGGACTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCACTGGAAGACACTGATAACAGTAAAAGGAAGAAGTTGAATGGGGCACAAGTTGATGATTCTTGCCAAGAGAAAGAAAATGCTCAACAGAAGAATGAAGCTATCAAATACCCAATTGATGATCTCTTGGTGAAGCCTGGTCCAGACGATCCTGTTTTCACTGATCGTCCTTCTCCATCAAAAGACTTCAACATTCCAATGAGTTGTGTTGGGGATCTCTTAATGGTTTGGGATTTGCTTAATTCCTTTGGTAGACTGTTACACCTTTGGCCTTACTCTCTAGAAGATTTTGAAAATGCAATCTGTCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGATTTCTCATCAAAGATGGCGATGAATACTCTTTGGCTGTGAAGAACCAAAAATTAAAGTCTAAGATTACAATGAATAATTGGACAGAATATTTATGCTATTTCCTAGATGTGATCAATATTCCTGAACTGCGGCACCATGAAGCAACTATAAAACGGGGACATTATGGCCTTGTAGATGTCAGCGCTAAATTAGAAATCTTATCCGAATTGGTCAATCAAGCCCTTGAAACTGCAATTTTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCTCTAGAAGGGAAGAGTGTAGGAGGACAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCAAGAAGCAATGGATTTGTGGATGGGCTTCTGAATGGTGCTAAAGTCCCAACGAATGATAATCATGGTATACAAAATGGAGACATGGATGAGAAAAGTCTTGTAGAGATAGAACCATCTGGGCAAAACGGACAAATGGATAGAAGTGAGATCAAGCCTTTACATCCTGTTTCAAAAAAGACGCATAAGAAGCTAAATTCAGATCTGAAAGAACCAACTAAAAATGGAAAAGAATTGTCCAGAAAGGAATCACCAAAACAGTCGAAAGCTGATAAGGAGGATCTGTCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTCGAAAAGGAGATGGAGAAACGATTTGTTCGTAGAAGTCCATTAGGTAAAGACAGAGATCACAATAGGTATTGGTGGTTCCGCCGAGATGGGCGGATATTTGTTGAAAGCTCTGACTCCAAGGAATGGGGATACTACAGCAGTAAGGAAGAGCTCGATGCATTGATGAGTTCCCTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCAAAAGCAACTACAAAAATATTATACTAAAATATGCTCAGAACTCCAGAAAAGGTCAAAGGATTTGATGCACAGGATTATAGATGAATCTGTACTTCGTAGGTCTACTCGTGTTAGAGCTCCACCTAGGCAGAATCCAGCCAATGCTTTCCTCAGATATGTTAACAAGTGGAAAGAAGAATAG 2124 0.3978 MPLLRRKPFALAEPPEELKPDEPVYQIRFTKEIFRDYPDYLKQLNQYRQRVWMCKVTGKTGLTYEEAMVSEQHATEKVQQFPKELMTTALGIIQYSMLPLKDLADSIGEKLQKRLFVGAELHGKKGDGVHPCRILKVIQKGVDTFCYEVAWLDKNKSISEQAELCAEDLVHKKPLFSRNILKSFIRESTCRNAPWVLHDELAKSHGISTDIPEELRGRVFYRDGLLICSKKRKNEESLEDTDNSKRKKLNGAQVDDSCQEKENAQQKNEAIKYPIDDLLVKPGPDDPVFTDRPSPSKDFNIPMSCVGDLLMVWDLLNSFGRLLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRFLIKDGDEYSLAVKNQKLKSKITMNNWTEYLCYFLDVINIPELRHHEATIKRGHYGLVDVSAKLEILSELVNQALETAIFREKLDEIIEQRQALGASRREECRRTREEKERLKAESRSNGFVDGLLNGAKVPTNDNHGIQNGDMDEKSLVEIEPSGQNGQMDRSEIKPLHPVSKKTHKKLNSDLKEPTKNGKELSRKESPKQSKADKEDLSEKNSKEQRKEYFEKEMEKRFVRRSPLGKDRDHNRYWWFRRDGRIFVESSDSKEWGYYSSKEELDALMSSLNCKGERERALQKQLQKYYTKICSELQKRSKDLMHRIIDESVLRRSTRVRAPPRQNPANAFLRYVNKWKEE 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00762 707 MobiDBLite consensus disorder prediction 523 577 - -
Viun3g00762 707 Pfam DDT domain 304 361 IPR018501 -
Viun3g00762 707 MobiDBLite consensus disorder prediction 237 266 - -
Viun3g00762 707 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Viun3g00762 707 MobiDBLite consensus disorder prediction 451 577 - -
Viun3g00762 707 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Viun3g00762 707 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 589 654 IPR028941 -
Viun3g00762 707 SMART testlast3 303 364 IPR018501 -
Viun3g00762 707 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Viun3g00762 707 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 705 - -
Viun3g00762 707 MobiDBLite consensus disorder prediction 451 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00762 Viun-Chr3 4695916 4702365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00762 521 653 Homeobox Transcription Factor Family AT1G28420 33.099 3.86e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Viun3g00762 WAC_Acf1_DNA_bd 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00762 - - var:108323886 1337.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00762 3 4695916 4702365 Viun3g00762 3 4695916 4702365 ECH
Viun3g00762 3 4695916 4702365 Viun9g01665 9 25132958 25138587 PCT