Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00760 ATGGCCTTAGCCATGGTTCGTAGGAATCTCATCACCCACTACACCAAGTTTGCATCTTCTTGGAGTGTGTTGTCTCGCCATTCCTCAATCCATAACCCTTCCTTGGAGTCTGTTTCTCCATTTCATAGCCAATCTGGTGGTGGTGGTGGTGGAGGTGGCGGGTTGCCGTCTTACATGCGTGGAGCTGTGTATTGGGAACCCAATAAACCTCTTTCGATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAGGCCTGTGGAGTATGCCACTCTGATCTGCATGTTATAAAAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTCTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGACCACAATCTGACAGCAAAACAATTGAAAGGCTTCCCGTAGGGTCCCGAGTTGTTGGATCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGTCATGATGATCTGTGTGAAGCTTTCTTTGCCTATAACAGGGCTAAAGGAACCCTCTATGATGGTGAAACTAGACTATTTCTTCGAAACAGTGGAAAACCAGTATACATGTACAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGGCTGTACTACCAGAATCATTGCCATATCCAAAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGTGCTATGGCTCACGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCCTTTGGTGCTTCGGATATAATTGCTGTGGATGTTCAGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACCGTAAATTCAGCAAAGGAGGATCCCGTTGAAAAGATAAATGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTAGAAGCCTTGGGGAGACCACAAACATTTGCTCAGTGCACACTAAGTGTGAAGGATGGTGGAAAAGCCGTAATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTCGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCGTATGGAGGCAGAGCGAGGCAAGATCTTCCAAAACTAATTAGATTGGCAGAAACAGGTATATTCAATCTTGACGATGCTGTTTCTAGAACATACACCTTTGAGGAGGCAGCAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTATTGGGCGAGCTGTGATTGAGATTATATGA 1293 0.454 MALAMVRRNLITHYTKFASSWSVLSRHSSIHNPSLESVSPFHSQSGGGGGGGGGLPSYMRGAVYWEPNKPLSIEEFHMPRPKAGEVLIKTKACGVCHSDLHVIKGEIPFSSPCVLGHEITGEVVEHGPQSDSKTIERLPVGSRVVGSFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRNSGKPVYMYSMGGLAEYCVVPANGVAVLPESLPYPKSAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVQDEKLQKAKTFGATHTVNSAKEDPVEKINEITGGKGVDVAVEALGRPQTFAQCTLSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLDDAVSRTYTFEEAAKAFQDLNEGKIIGRAVIEII 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00760 430 Pfam Zinc-binding dehydrogenase 259 390 IPR013149 -
Viun3g00760 430 FunFam Alcohol dehydrogenase (Zinc) 63 250 - -
Viun3g00760 430 CDD Zn_ADH10 59 428 - -
Viun3g00760 430 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 58 427 - -
Viun3g00760 430 SUPERFAMILY GroES-like 57 255 IPR011032 -
Viun3g00760 430 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 116 130 IPR002328 GO:0008270|GO:0016491
Viun3g00760 430 Gene3D - 63 419 - -
Viun3g00760 430 SMART PKS_ER_names_mod 66 427 IPR020843 GO:0016491
Viun3g00760 430 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 221 394 IPR036291 -
Viun3g00760 430 Gene3D - 236 373 - -
Viun3g00760 430 FunFam Sorbitol dehydrogenase 236 374 - -
Viun3g00760 430 Pfam Alcohol dehydrogenase GroES-like domain 84 214 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00760 Viun-Chr3 4690776 4694780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00760 76 429 Monolignol Biosynthesis Gene Families AT4G37990 25.556 2.62e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00760 - - gmx:100775182 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00760 3 4690776 4694780 Viun3g00760 3 4690776 4694780 ECH