Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00750 ATGGGTAGAACACCCTGCACTGAAAAACACCACCTTTCTAAAGGACCATGGTCTAAGGAGGAAGATCAACTCCTCATTCATTATATCAACCGTCATGGAGAAGGAAACTGGAGATGGCTTCCTGAGGCAGCAGGTTTGCTTCGGTGTGGTAAAAGTTGCAGACTGAGATGGATGAATTACCTGAGACCCAACCTCAAGAAGGGGAACTTCACTCAAGAAGAAACTGATCTCATCATTCACCACCATAGCTTACTGGGAAACAAATGGGCACAGATAGCAGCAATTTTACCTGGAAGAACAGATAACGAGATAAAAAACTACTGGAACACCCACATCAAACGTCAGCTCTATGCCAACGGAATCGACCCTGTGACCCATAAACCACTCAACAAGGACATGACAGATCCACCTGCGAATTCTCAAGTGTCTGAGGTTGTCACCACAAGTGAGAACAACAACAACAACGACAACAGCTATTTCAATGTTTTTCTCAATTCAAAGGTGCAGATCAGAAGTTATGGTTACTCAACTGGTGAATGCTCTAATAACAGTAGTGGTGTTACCATAGAGGAAGCTCAGCCTCGAATCAACTTGAACCTTTCCTTATCTCCACCACCAAAGCCCCAAGGTTTTTGCATGAACCCTGAATGGGTGCAACCACAAGGGCAACAAAAGGAGCGAGCTTTGTCTGCAAGGAATATGAATGTTGATGGTGGTAACCGAGGTGTGTGTCTGTGGTGCAGTCTAGGGTTGCAAAGTAACCATGCTTGTAGCCGCAAAGACAAGGGTAGCAGTGATGATTGA 804 0.4502 MGRTPCTEKHHLSKGPWSKEEDQLLIHYINRHGEGNWRWLPEAAGLLRCGKSCRLRWMNYLRPNLKKGNFTQEETDLIIHHHSLLGNKWAQIAAILPGRTDNEIKNYWNTHIKRQLYANGIDPVTHKPLNKDMTDPPANSQVSEVVTTSENNNNNDNSYFNVFLNSKVQIRSYGYSTGECSNNSSGVTIEEAQPRINLNLSLSPPPKPQGFCMNPEWVQPQGQQKERALSARNMNVDGGNRGVCLWCSLGLQSNHACSRKDKGSSDD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00750 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun3g00750 267 CDD SANT 69 112 IPR001005 -
Viun3g00750 267 CDD SANT 16 61 IPR001005 -
Viun3g00750 267 FunFam MYB transcription factor 68 129 - -
Viun3g00750 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun3g00750 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun3g00750 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun3g00750 267 SMART sant 66 114 IPR001005 -
Viun3g00750 267 SMART sant 13 63 IPR001005 -
Viun3g00750 267 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun3g00750 267 FunFam MYB-related transcription factor 13 66 - -
Viun3g00750 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun3g00750 267 Gene3D - 14 66 - -
Viun3g00750 267 Gene3D - 68 155 - -
Viun3g00750 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun3g00750 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00750 Viun-Chr3 4545905 4547421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00750 1 205 MYB Transcription Factor Family AT2G16720 53.365 3.76e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g00750 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00750 K09422 - gmx:100808083 270.781