Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00743 ATGGCGGCGAAATCGAGTTCGAGTTCGACAAACGTGACGGTGAAAGCAGCGTGGGTTCTGCCGCACCGGACGCAGAACATCCGGGAGGTGTACGAGGTGGGTAGGAAACTGGGGCAGGGGCAGTTCGGGACGACGTTCCTGTGCACGCACCGGACGACTGGGGGAAAGTTCGCGTGCAAGTCGATTCCGAAGCGGAAGCTTCTGTGCAAGGAGGATTACGAGGACGTGTGGCGGGAGATTCAGATTATGCACCACTTGTCGGAGCACGCCAACGTGGTTCGCATCGAGGGTGCGTACGAGGACTCTTCCGCCGTGCACCTCGTGATGGAGCTCTGCGAGGGTGGCGAGCTCTTCGACCGGATCGTCCAGAAGGGCCACTACAGTGAGAGACAGGCGGCGAGGTTGATAAAGACCATTGTTGAGGTTGTCGAGGCTTGTCACTCGCTTGGAGTCATGCACAGGGACCTCAAGCCCGAGAACTTTCTCTTTGATACTGTTGACGAGGATGCCAAGCTAAAAGCTACCGACTTCGGGTTGTCCGTTTTTTACAAGCCTGGTGAATCATTTTGTGACGTTGTCGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTCTATGGGCCTGAATCAGATGTGTGGAGTGCAGGGGTTATTCTGTACATTTTGTTAAGTGGGGTGCCACCATTTTGGGCTGAAACTGAACCCGGGATCTTCAAACAGATTTTATTGGGAAAACTTGATTTTCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACCAGGCTTACAGCACATGAAGTACTCCGTCACCCATGGATTGTTGATGACAGCATTGCACCGGATAAACCTCTAGATTCTGCAGTTTTATCACGCCTGAAACAGTTCTCTGCAATGAATAAACTGAAAAAGATGGCATTGCGGGCCAAGGGTATTGGAGCCGGAAAAAGCTACATGGTTGGAATCAAATCAAACAATTGGATTATGTCCCAATGGATTTCTCAACAGCTATCATTGCCTCATCCTTATTCTTACATGATTTTCATATCTATGAGCCTTAAAATTGGAAGACAAGGTTCAGTTCTGAAGGAACTTGAACCATTCTTTGCTGGAAGTTTTGGCTTTGCTTCAAGTAGGAAATACCAAGGTTGGAAAGCTAACATAAGTAGATATTGA 1221 0.4889 MAAKSSSSSTNVTVKAAWVLPHRTQNIREVYEVGRKLGQGQFGTTFLCTHRTTGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHANVVRIEGAYEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFKQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDSIAPDKPLDSAVLSRLKQFSAMNKLKKMALRAKGIGAGKSYMVGIKSNNWIMSQWISQQLSLPHPYSYMIFISMSLKIGRQGSVLKELEPFFAGSFGFASSRKYQGWKANISRY 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00743 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Viun3g00743 406 ProSiteProfiles Protein kinase domain profile. 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00743 406 FunFam Calcium-dependent protein kinase SK5 199 294 - -
Viun3g00743 406 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Viun3g00743 406 Gene3D Transferase(Phosphotransferase) domain 1 118 332 - -
Viun3g00743 406 FunFam CDPK-related kinase 3 23 191 - -
Viun3g00743 406 SMART serkin_6 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00743 406 Pfam Protein kinase domain 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00743 406 CDD STKc_CAMK 30 288 - -
Viun3g00743 406 SUPERFAMILY Protein kinase-like (PK-like) 31 290 IPR011009 -
Viun3g00743 406 Gene3D Phosphorylase Kinase; domain 1 33 117 - -
Viun3g00743 406 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 339 - -
Viun3g00743 406 FunFam Calcium-dependent protein kinase 1 33 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00743 Viun-Chr3 4514715 4519162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00743 19 323 EF-hand Containing Proteins AT1G35670 77.705 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun3g00743 Pkinase 1.9e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00743 K13412 - gmx:547825 618.616