Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00741 ATGGCGGCGAAATCGAGTTCGAGTTCGACAAACGTGACGGTGAAAGCAGCGTGGGTTCTGCCGCACCGGACGCAGAACATCCGGGAGGTGTACGAGGTGGGTAGGAAACTGGGGCAGGGGCAGTTCGGGACGACGTTCCTGTGCACGCACCGGACGACTGGGGGAAAGTTCGCGTGCAAGTCGATTCCGAAGCGGAAGCTTCTGTGCAAGGAGGATTACGAGGACGTGTGGCGGGAGATTCAGATTATGCACCACTTGTCGGAGCACGCCAACGTGGTTCGCATCGAGGGTGCGTACGAGGACTCTTCCGCCGTGCACCTCGTGATGGAGCTCTGCGAGGGTGGCGAGCTCTTCGACCGGATCGTCCAGAAGGGCCACTACAGTGAGAGACAGGCGGCGAGGTTGATAAAGACCATTGTTGAGGTTGTCGAGGCTTGTCACTCGCTTGGAGTCATGCACAGGGACCTCAAGCCCGAGAACTTTCTCTTTGATACTGTTGACGAGGATGCCAAGCTAAAAGCTACCGACTTCGGGTTGTCCGTTTTTTACAAGCCTGGTGAATCATTTTGTGACGTTGTCGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTCTATGGGCCTGAATCAGATGTGTGGAGTGCAGGGGTTATTCTGTACATTTTGTTAAGTGGGGTGCCACCATTTTGGGCTGAAACTGAACCCGGGATCTTCAAACAGATTTTATTGGGAAAACTTGATTTTCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACCAGGCTTACAGCACATGAAGTACTCCGTCACCCATGGATTGTTGATGACAGCATTGCACCGGATAAACCTCTAGATTCTGCAGTTTTATCACGCCTGAAACAGTTCTCTGCAATGAATAAACTGAAAAAGATGGCATTGCGGGCCAAGGGTATTGGAGCCGGAAAAAGCTACATGGTTGGAATCAAATCAAACAATTGGATTATGTCCCAATGGATTTCTCAACAGCTATCATTGGTTATTGCCGAGAGGCTGTCTGAAGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACCGACAACAGTGGATCCATAACGTTTGATGAGTTAAAAGACGGCTTGAAGCGAGTAGGATCTGAACTCATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCAGATATTGATAAAAGTGGAACAATTGATTATGGTGAATTCATTGCCGCCACTGTTCATTTAAACAAGCTGGAGAGAGAGGAAAACCTGGTGTCAGCCTTCTCCTATTTTGACAAGGATGGTAGTGGTTACATAACCCTTGATGAGATACAACAAGCTTGTAAGGACTTTGGTTTAGATGATGTTCACATTGATGACATGATCAAGGAAATTGACCAAGACAATGATGGGCAAATAGATTATGGGGAATTCACTGCCATGATGAGAAAGGGCAATGGAGGAATTGGAAGAAGAACTATGAGAAAAACACTGAATTTAAGAGATGCTTTTGGGTTAGTAGACAATGGGTCCAATCAAGTTATTGAGGGCTACTTTAAGTAA 1611 0.4711 MAAKSSSSSTNVTVKAAWVLPHRTQNIREVYEVGRKLGQGQFGTTFLCTHRTTGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHANVVRIEGAYEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFKQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDSIAPDKPLDSAVLSRLKQFSAMNKLKKMALRAKGIGAGKSYMVGIKSNNWIMSQWISQQLSLVIAERLSEEEIGGLKELFKMIDTDNSGSITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDVHIDDMIKEIDQDNDGQIDYGEFTAMMRKGNGGIGRRTMRKTLNLRDAFGLVDNGSNQVIEGYFK 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00741 536 FunFam calcium-dependent protein kinase SK5 357 429 - -
Viun3g00741 536 Pfam Protein kinase domain 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00741 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Viun3g00741 536 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Viun3g00741 536 ProSiteProfiles Protein kinase domain profile. 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00741 536 FunFam Calcium-dependent protein kinase SK5 199 294 - -
Viun3g00741 536 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Viun3g00741 536 Gene3D - 433 536 - -
Viun3g00741 536 Gene3D Transferase(Phosphotransferase) domain 1 118 332 - -
Viun3g00741 536 FunFam CDPK-related kinase 3 23 191 - -
Viun3g00741 536 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
Viun3g00741 536 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Viun3g00741 536 FunFam Calcium-dependent protein kinase 1 33 116 - -
Viun3g00741 536 SMART serkin_6 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00741 536 CDD EFh 368 427 IPR002048 GO:0005509
Viun3g00741 536 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Viun3g00741 536 SUPERFAMILY Protein kinase-like (PK-like) 9 312 IPR011009 -
Viun3g00741 536 CDD STKc_CAMK 30 288 - -
Viun3g00741 536 SMART efh_1 473 501 IPR002048 GO:0005509
Viun3g00741 536 SMART efh_1 367 395 IPR002048 GO:0005509
Viun3g00741 536 SMART efh_1 439 467 IPR002048 GO:0005509
Viun3g00741 536 SMART efh_1 403 431 IPR002048 GO:0005509
Viun3g00741 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 494 - -
Viun3g00741 536 Pfam EF-hand domain pair 368 428 IPR002048 GO:0005509
Viun3g00741 536 Pfam EF-hand domain pair 438 499 IPR002048 GO:0005509
Viun3g00741 536 Gene3D Phosphorylase Kinase; domain 1 33 117 - -
Viun3g00741 536 ProSiteProfiles EF-hand calcium-binding domain profile. 473 504 IPR002048 GO:0005509
Viun3g00741 536 Gene3D - 339 432 - -
Viun3g00741 536 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Viun3g00741 536 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Viun3g00741 536 FunFam Calcium-dependent protein kinase SK5 433 528 - -
Viun3g00741 536 SUPERFAMILY EF-hand 359 500 IPR011992 -
Viun3g00741 536 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00741 Viun-Chr3 4513766 4519156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00741 19 522 EF-hand Containing Proteins AT1G35670 73.767 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun3g00741 Pkinase 4e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00741 K13412 - gmx:547825 955.281